SMTL ID : 3bjq.1

CRYSTAL STRUCTURE OF A PHAGE-RELATED PROTEIN (BB3626) FROM BORDETELLA BRONCHISEPTICA RB50 AT 2.05 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-10-mer

Ligands

22 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 11 residues within 4Å: Chain A: A.21, R.22, Y.24, K.32, V.37, L.116, A.120, H.123, Q.268, P.273, D.293 Ligand excluded by PLIP PG4.2: 11 residues within 4Å: Chain B: A.21, R.22, Y.24, K.32, V.37, L.116, A.120, H.123, Q.268, D.293, N.295 Ligand excluded by PLIP PG4.3: 14 residues within 4Å: Chain B: Q.26, T.28, L.29, R.117, L.121, T.226, A.227, R.228 Chain E: Y.58, N.59, G.174, M.175, Y.249 Ligands: PG4.4 Ligand excluded by PLIP PG4.4: 9 residues within 4Å: Chain B: G.23, Y.24, R.25, Q.26 Chain E: S.251, D.252, N.253, P.254 Ligands: PG4.3 Ligand excluded by PLIP PG4.5: 7 residues within 4Å: Chain B: D.252, N.253, P.254 Chain C: Y.24, R.25, Q.26, N.113 Ligand excluded by PLIP PG4.6: 13 residues within 4Å: Chain C: A.21, R.22, Y.24, R.25, K.32, V.37, L.116, A.120, H.123, Q.268, P.273, D.293, N.295 Ligand excluded by PLIP PG4.7: 11 residues within 4Å: Chain B: Y.58, N.59, G.174, M.175, Y.249 Chain C: Q.26, T.28, R.117, L.121, A.227, R.228 Ligand excluded by PLIP PG4.9: 12 residues within 4Å: Chain D: A.21, R.22, Y.24, R.25, K.32, V.37, L.116, A.120, H.123, Q.268, D.293, N.295 Ligand excluded by PLIP PG4.10: 14 residues within 4Å: Chain A: Y.58, N.59, G.174, M.175, Y.249, E.260 Chain D: Q.26, T.28, L.29, R.117, L.121, T.226, A.227, R.228 Ligand excluded by PLIP PG4.11: 13 residues within 4Å: Chain E: A.21, R.22, Y.24, R.25, K.32, V.37, L.116, A.120, H.123, Q.268, P.273, D.293, N.295 Ligand excluded by PLIP PG4.12: 14 residues within 4Å: Chain D: Y.58, N.59, G.174, M.175, E.176, Y.249 Chain E: Q.26, T.28, L.29, R.117, L.121, T.226, A.227, R.228 Ligand excluded by PLIP PG4.13: 14 residues within 4Å: Chain F: A.21, R.22, Y.24, R.25, K.32, V.37, L.116, M.119, A.120, H.123, Q.268, P.273, D.293, N.295 Ligand excluded by PLIP PG4.14: 15 residues within 4Å: Chain F: Q.26, T.28, L.29, R.117, T.226, A.227, R.228 Chain J: Y.58, N.59, G.174, M.175, Y.249, S.251, N.253, E.260 Ligand excluded by PLIP PG4.15: 11 residues within 4Å: Chain G: A.21, R.22, Y.24, K.32, V.37, L.116, A.120, H.123, Q.268, D.293, N.295 Ligand excluded by PLIP PG4.16: 6 residues within 4Å: Chain G: A.135, K.136, Y.137, N.138, M.302 Ligands: PG4.17 Ligand excluded by PLIP PG4.17: 6 residues within 4Å: Chain G: P.134, A.135, Y.137, A.139, K.142 Ligands: PG4.16 Ligand excluded by PLIP PG4.18: 12 residues within 4Å: Chain H: A.21, R.22, Y.24, K.32, V.37, L.116, M.119, A.120, H.123, Q.268, D.293, N.295 Ligand excluded by PLIP PG4.19: 7 residues within 4Å: Chain H: Q.26, T.28, R.117, R.228 Chain I: N.59, G.174, M.175 Ligand excluded by PLIP PG4.20: 14 residues within 4Å: Chain I: A.21, R.22, Y.24, R.25, K.32, V.37, L.116, M.119, A.120, H.123, Q.268, P.273, D.293, N.295 Ligand excluded by PLIP PG4.21: 10 residues within 4Å: Chain G: Y.58, N.59, G.174, M.175, Y.249 Chain I: Q.26, T.28, R.117, A.227, R.228 Ligand excluded by PLIP PG4.22: 11 residues within 4Å: Chain J: A.21, R.22, Y.24, K.32, V.37, L.116, A.120, H.123, Q.268, D.293, N.295 Ligand excluded by PLIP PG4.23: 13 residues within 4Å: Chain H: Y.58, N.59, G.174, M.175, Y.249, E.260 Chain J: Q.26, T.28, L.29, R.117, L.121, A.227, R.228 Ligand excluded by PLIP

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 3 residues within 4Å: Chain D: K.191, T.209, I.210 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of phage-related protein (NP_890161.1) from Bordetella bronchiseptica at 2.05 A resolution. To be published

Release Date

2007-12-18

Peptides

Phage-related protein: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Phage-related protein