SMTL ID : 3bk7.1

Structure of the complete ABCE1/RNAase-L Inhibitor protein from Pyrococcus abysii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 1 residues within 4Å: Chain A: I.63 No protein-ligand interaction detected (PLIP) MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.3: 12 residues within 4Å: Chain A: C.43, P.44, V.45, A.52, I.53, C.69, T.70, G.71, C.72, G.73, C.75, I.86 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.43, A:C.69, A:C.72, A:C.75 SF4.4: 11 residues within 4Å: Chain A: C.29, N.30, P.31, C.34, F.37, L.38, C.39, C.79, P.80, F.81, I.84 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.29, A:C.34, A:C.39, A:C.79

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.5: 12 residues within 4Å: Chain A: Y.367, S.369, F.370, P.390, N.391, G.392, I.393, G.394, K.395, T.396, T.397, G.550 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.391, A:G.392, A:I.393, A:G.394, A:K.395, A:T.396, A:T.397 Salt bridges: A:K.395 pi-Stacking: A:Y.367, A:Y.367 ADP.6: 11 residues within 4Å: Chain A: Y.101, F.106, P.125, N.126, G.127, T.128, G.129, K.130, T.131, T.132, G.306 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:P.125, A:N.126, A:G.127, A:G.127, A:T.128, A:G.129, A:K.130, A:T.131, A:T.132, A:T.132 Water bridges: A:K.130, A:T.131 Salt bridges: A:K.130 pi-Stacking: A:Y.101, A:Y.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karcher, A. et al., X-ray Structure of the Complete ABC Enzyme ABCE1 from Pyrococcus abyssi. J.Biol.Chem. (2008)

Release Date

2007-12-25

Peptides

ABC transporter ATP-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ABC transporter ATP-binding protein