SMTL ID : 3bkw.1

Crystal structure of S-adenosylmethionine dependent methyltransferase (NP_104914.1) from Mesorhizobium loti at 1.60 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: H.118, M.150, H.190, R.192, T.197 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.190, A:R.192 EDO.2: 6 residues within 4Å: Chain A: E.121, G.176, P.177, H.190, H.191, R.192 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.176, A:H.190, A:H.191 EDO.3: 4 residues within 4Å: Chain A: D.122, A.124, R.125, R.128 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.122, A:R.125, A:R.128, A:R.128 Water bridges: A:A.124 EDO.4: 6 residues within 4Å: Chain A: L.45, D.109, S.135, P.136, G.137, G.138 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.109 EDO.5: 5 residues within 4Å: Chain A: N.199, I.202, R.203 Chain B: E.209, H.210 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.199, A:R.203, B:H.210 EDO.6: 4 residues within 4Å: Chain A: R.154, G.156, W.157, A.158 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.154 EDO.7: 5 residues within 4Å: Chain A: P.40, E.41, V.42, W.60, H.64 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.40, A:V.42 Water bridges: A:L.39, A:H.64 EDO.8: 6 residues within 4Å: Chain B: L.117, H.118, V.123, T.144, R.192, T.197 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.144, B:T.144, B:R.192 EDO.9: 6 residues within 4Å: Chain B: E.121, G.176, P.177, H.190, H.191, R.192 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.192 EDO.10: 3 residues within 4Å: Chain B: A.37, M.38, H.210 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.209, B:H.210 EDO.11: 3 residues within 4Å: Chain B: S.75, E.76, K.77 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.76, B:K.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of S-adenosylmethionine dependent methyltransferase (NP_104914.1) from Mesorhizobium loti at 1.60 A resolution. To be published

Release Date

2007-12-18

Peptides

S-adenosylmethionine dependent methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

S-adenosylmethionine dependent methyltransferase