SMTL ID : 3bln.1

Crystal structure of acetyltransferase GNAT family (NP_981174.1) from Bacillus cereus ATCC 10987 at 1.31 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.31 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: L.67, S.68, S.100, S.101, T.102 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.101 ACT.7: 5 residues within 4Å: Chain B: L.67, S.68, S.100, S.101, T.102 1 PLIP interactions: 1 interactions with chain B Water bridges: B:S.101

6 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.2: 3 residues within 4Å: Chain A: N.31, K.34, H.35 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.34, A:H.35 MRD.3: 4 residues within 4Å: Chain A: Y.32, S.68, L.69 Chain B: D.63 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.32, A:Y.32, A:L.69 Hydrogen bonds: B:D.63 MRD.6: 7 residues within 4Å: Chain A: N.60, F.61, F.62 Chain B: N.60, F.66, S.68 Ligands: MPD.5 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:F.62, A:F.62, B:F.66, B:F.66 Hydrogen bonds: A:F.62 Water bridges: A:D.63, B:N.60 MRD.8: 3 residues within 4Å: Chain B: N.31, K.34, H.35 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:K.34, B:H.35 MRD.9: 4 residues within 4Å: Chain A: D.63 Chain B: Y.32, S.68, L.69 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.32, B:Y.32, B:L.69 Hydrogen bonds: A:D.63 MRD.12: 7 residues within 4Å: Chain A: N.60, F.66, S.68 Chain B: N.60, F.61, F.62 Ligands: MPD.11 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:F.66, A:F.66, B:F.62, B:F.62 Water bridges: A:N.60, B:D.63 Hydrogen bonds: B:F.62

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: S.9, D.12, I.44, K.46 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.9, A:S.9, A:D.12 Water bridges: A:D.12 GOL.10: 4 residues within 4Å: Chain B: S.9, D.12, I.44, K.46 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.9, B:S.9, B:D.12 Water bridges: B:D.12

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.5: 9 residues within 4Å: Chain A: N.60, F.61, F.62 Chain B: D.58, N.60, F.61, F.66, S.68 Ligands: MRD.6 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:F.62, A:F.62, B:D.58, B:F.66, B:F.66, B:F.66 Hydrogen bonds: A:F.62 Water bridges: A:D.63 MPD.11: 9 residues within 4Å: Chain A: D.58, N.60, F.61, F.66, S.68 Chain B: N.60, F.61, F.62 Ligands: MRD.12 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:D.58, A:F.66, A:F.66, A:F.66, B:F.62, B:F.62 Hydrogen bonds: B:F.62 Water bridges: B:D.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of acetyltransferase GNAT family (NP_981174.1) from Bacillus cereus ATCC 10987 at 1.31 A resolution. To be published

Release Date

2007-12-18

Peptides

Acetyltransferase GNAT family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Acetyltransferase GNAT family