- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ADV: ALPHA-BETA METHYLENE ADP-RIBOSE(Non-covalent)
ADV.7: 20 residues within 4Å:- Chain A: W.28, V.29, R.51, R.84, A.96, G.97, L.98, E.112, E.116, M.132, I.141, E.166
- Chain B: W.46, E.47, D.133, P.134, G.135
- Ligands: MG.1, MG.2, MG.3
28 PLIP interactions:21 interactions with chain A, 7 interactions with chain B- Hydrogen bonds: A:R.51, A:R.84, A:R.84, A:L.98, A:E.166, A:E.166, B:E.47, B:E.47, B:G.135
- Water bridges: A:R.51, A:R.51, A:R.51, A:Q.82, A:Q.82, A:Q.82, A:A.96, A:R.111, A:G.165, A:D.194, A:R.196, B:D.133
- Salt bridges: A:R.84, A:R.196
- pi-Stacking: A:W.28, A:W.28, B:W.46, B:W.46, B:W.46
ADV.8: 20 residues within 4Å:- Chain A: W.46, E.47, D.133, P.134, G.135, L.136
- Chain B: W.28, V.29, R.51, R.84, A.96, G.97, L.98, E.112, E.116, M.132, E.166
- Ligands: MG.4, MG.5, MG.6
24 PLIP interactions:6 interactions with chain A, 18 interactions with chain B- Hydrogen bonds: A:E.47, A:E.47, A:G.135, B:R.51, B:R.51, B:R.51, B:R.84, B:R.84, B:L.98, B:E.166, B:E.166
- pi-Stacking: A:W.46, A:W.46, A:W.46, B:W.28, B:W.28, B:W.28
- Water bridges: B:R.51, B:Q.82, B:A.96, B:R.111, B:D.194
- Salt bridges: B:R.84, B:R.196
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zha, M. et al., Molecular Mechanism of ADP-Ribose Hydrolysis By Human NUDT5 From Structural and Kinetic Studies. J.Mol.Biol. (2008)
- Release Date
- 2008-05-20
- Peptides
- ADP-sugar pyrophosphatase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ADV: ALPHA-BETA METHYLENE ADP-RIBOSE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zha, M. et al., Molecular Mechanism of ADP-Ribose Hydrolysis By Human NUDT5 From Structural and Kinetic Studies. J.Mol.Biol. (2008)
- Release Date
- 2008-05-20
- Peptides
- ADP-sugar pyrophosphatase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B