SMTL ID : 3bmv.1

Cyclodextrin glycosyl transferase from Thermoanerobacterium thermosulfurigenes EM1 mutant S77P

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: N.140, I.191, D.200, H.234 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:I.191, A:D.200, A:H.234, H2O.1, H2O.5 CA.2: 6 residues within 4Å: Chain A: D.27, N.29, N.32, N.33, G.51, D.53 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.27, A:N.29, A:G.51, A:D.53, H2O.5

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.104, E.154, R.157 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.104, A:R.104, A:Y.159, A:Y.159 Salt bridges: A:R.104, A:R.157 SO4.4: 3 residues within 4Å: Chain A: H.665, T.666, V.679 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.666, A:T.666 Water bridges: A:Q.682 Salt bridges: A:H.665 SO4.5: 3 residues within 4Å: Chain A: T.676, V.677, I.678 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.678, A:I.678 SO4.6: 4 residues within 4Å: Chain A: Y.492, S.494, S.495, S.496 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.495, A:S.496 Water bridges: A:N.427, A:S.494 SO4.7: 5 residues within 4Å: Chain A: H.177, Y.179, N.202, R.587, V.627 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.179, A:N.202 Water bridges: A:G.174, A:H.178, A:R.587, A:R.587, A:R.587 Salt bridges: A:R.587

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 4 residues within 4Å: Chain A: V.6, H.127, A.128, N.130 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.130, A:N.130 GOL.9: 9 residues within 4Å: Chain A: Y.187, I.191, Y.192, P.236, F.237, G.238, F.623, Y.635, D.636 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.187, A:Y.192, A:Y.192, A:F.237, A:G.238, A:D.636 Water bridges: A:Y.187, A:D.636 GOL.10: 4 residues within 4Å: Chain A: T.595, V.596, E.599, Y.630 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.595, A:V.596 Water bridges: A:G.598, A:N.624 GOL.11: 7 residues within 4Å: Chain A: H.99, Y.101, W.102, H.328, D.329, D.371, R.375 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.99, A:D.371, A:R.375, A:R.375 Water bridges: A:Y.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kelly, R.M. et al., Elimination of competing hydrolysis and coupling side reactions of a cyclodextrin glucanotransferase by directed evolution. Biochem.J. (2008)

Release Date

2008-05-27

Peptides

Cyclomaltodextrin glucanotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclomaltodextrin glucanotransferase

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