SMTL ID : 3bo5.1

Crystal structure of methyltransferase domain of human Histone-lysine N-methyltransferase SETMAR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.62, C.76, C.105, C.109 Ligands: ZN.2, ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.62, A:C.76, A:C.105, A:C.109 ZN.2: 6 residues within 4Å: Chain A: C.69, C.105, C.111, C.115 Ligands: ZN.1, ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.69, A:C.105, A:C.111, A:C.115 ZN.3: 6 residues within 4Å: Chain A: C.62, C.64, C.69, C.74 Ligands: ZN.1, ZN.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.62, A:C.64, A:C.69, A:C.74 ZN.4: 4 residues within 4Å: Chain A: C.213, C.274, C.276, C.281 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.213, A:C.274, A:C.276, A:C.281

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.5: 19 residues within 4Å: Chain A: K.136, G.137, W.138, S.177, N.178, Y.179, R.207, F.208, L.209, N.210, H.211, Y.249, R.264, P.273, C.274, Y.275, C.276, L.285, F.287 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:W.138, A:W.138, A:S.177, A:N.178, A:N.178, A:Y.179, A:H.211, A:H.211, A:Y.275 Water bridges: A:N.178, A:K.272, A:K.272

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: I.63, C.64, V.65, K.66, T.67, T.73 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.65, A:K.66, A:T.67, A:T.67 GOL.7: 3 residues within 4Å: Chain A: N.23, K.122, Q.125 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.23, A:K.122, A:Q.125 Water bridges: A:N.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, H. et al., The Crystal Structure of Methyltransferase Domain of Human Histone-lysine N-methyltransferase SETMAR in Complex With AdoHcy. To be Published

Release Date

2008-01-22

Peptides

Histone-lysine N-methyltransferase SETMAR: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase SETMAR