SMTL ID : 3bo9.1

Crystal structure of putative nitroalkan dioxygenase (TM0800) from Thermotoga maritima at 2.71 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 9 residues within 4Å: Chain A: S.155, G.156, G.183, G.184, M.204, G.205, T.206, G.290, S.292 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.156, A:G.183, A:G.184, A:G.205, A:T.206, A:G.290, A:S.292, A:S.292, A:S.292 Water bridges: A:I.185 PO4.11: 9 residues within 4Å: Chain B: S.155, G.156, G.183, G.184, M.204, G.205, T.206, G.290, S.292 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.156, B:G.184, B:G.205, B:T.206, B:T.206, B:G.290, B:S.292

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: W.36, G.271, S.272, L.273, R.274 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.271, A:G.271, A:L.273, A:R.274 SO4.3: 6 residues within 4Å: Chain A: S.228, I.229, R.230 Chain B: S.133, D.134, S.135 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.134, B:S.135, A:S.228 Salt bridges: A:R.230 SO4.4: 4 residues within 4Å: Chain A: V.270, G.271, R.274, R.275 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.274, A:R.275 SO4.5: 2 residues within 4Å: Chain A: K.226 Ligands: 2PE.7 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.226 SO4.12: 6 residues within 4Å: Chain B: W.36, L.269, G.271, S.272, L.273, R.274 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:W.36, B:L.269, B:G.271, B:L.273, B:R.274 SO4.13: 6 residues within 4Å: Chain A: S.133, D.134, S.135 Chain B: S.228, I.229, R.230 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.134, A:S.135, B:S.228, B:S.228 Salt bridges: B:R.230

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 6 residues within 4Å: Chain A: R.73, T.76, D.77, K.78, F.80, P.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.73, A:T.76

9 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.7: 8 residues within 4Å: Chain A: E.222, K.223, K.226, D.231, L.246, R.247, L.282 Ligands: SO4.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.223 2PE.8: 3 residues within 4Å: Chain A: E.71, Q.74, K.75 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.75 2PE.9: 7 residues within 4Å: Chain A: R.189, E.315, T.316, K.319 Chain B: F.195, A.196, G.198 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.315 2PE.10: 4 residues within 4Å: Chain A: K.238 Chain B: Q.255, E.256, F.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.238 2PE.14: 8 residues within 4Å: Chain B: E.222, K.223, K.226, D.231, L.246, R.247, P.249, L.282 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.222, B:K.223 2PE.15: 10 residues within 4Å: Chain A: F.195, A.196, G.198, A.199, E.200 Chain B: R.189, T.316, K.319, Y.323 Ligands: 2PE.17 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.323, A:A.199 2PE.16: 3 residues within 4Å: Chain B: E.71, Q.74, K.75 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.75 2PE.17: 6 residues within 4Å: Chain A: S.172, G.198, E.200 Chain B: R.189, Y.323 Ligands: 2PE.15 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.189 2PE.18: 3 residues within 4Å: Chain B: K.253, E.283, R.284 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of putative nitroalkan dioxygenase (TM0800) from Thermotoga maritima at 2.71 A resolution. To be published

Release Date

2007-12-25

Peptides

Putative nitroalkan dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative nitroalkan dioxygenase