- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 1 x SCN: THIOCYANATE ION(Non-functional Binders)
- 2 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
CDP.3: 15 residues within 4Å:- Chain A: Y.30, Y.31, P.60, V.61, K.62, S.63, G.64, R.65, T.66, H.67, R.186, L.210, R.211, F.214
- Ligands: MG.1
21 PLIP interactions:21 interactions with chain A- Hydrophobic interactions: A:Y.30
- Hydrogen bonds: A:Y.31, A:Y.31, A:K.62, A:S.63, A:G.64, A:R.65, A:T.66, A:H.67, A:R.186, A:R.186, A:L.210
- Water bridges: A:E.25, A:N.36, A:R.65, A:R.65, A:T.66, A:R.211, A:R.211
- Salt bridges: A:R.65, A:R.211
CDP.14: 17 residues within 4Å:- Chain B: Y.30, Y.31, P.60, V.61, K.62, S.63, G.64, R.65, T.66, H.67, M.174, R.186, L.210, R.211, F.214
- Ligands: MG.11, EDO.19
21 PLIP interactions:21 interactions with chain B- Hydrophobic interactions: B:Y.30
- Hydrogen bonds: B:Y.31, B:Y.31, B:K.62, B:S.63, B:G.64, B:R.65, B:T.66, B:T.66, B:H.67, B:H.67, B:R.186, B:L.210
- Water bridges: B:E.25, B:R.65, B:R.65, B:T.66, B:R.185, B:R.211
- Salt bridges: B:R.65, B:R.211
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 3 residues within 4Å:- Chain A: R.205, L.242
- Ligands: SCN.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.205, A:R.205, A:L.242
EDO.5: 5 residues within 4Å:- Chain A: L.180, R.200, L.203, N.204, R.208
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.200, A:N.204, A:R.208, A:R.208
- Water bridges: A:D.177
EDO.6: 6 residues within 4Å:- Chain A: I.94, S.95, L.98
- Chain B: P.18, V.19, H.20
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.95
EDO.7: 3 residues within 4Å:- Chain A: D.114, A.115, S.146
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.146, A:S.146
- Water bridges: A:D.112
EDO.8: 5 residues within 4Å:- Chain A: S.224, M.225, Q.228, R.229, K.230
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.228
EDO.9: 5 residues within 4Å:- Chain A: G.49, G.51, K.137, R.138, G.139
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.51, A:G.51, A:K.137
EDO.10: 3 residues within 4Å:- Chain A: E.38, T.168, Y.169
No protein-ligand interaction detected (PLIP)EDO.15: 3 residues within 4Å:- Chain B: D.114, A.115, S.146
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.146
- Water bridges: B:D.112, B:D.112, B:D.114
EDO.16: 1 residues within 4Å:- Chain B: W.165
2 PLIP interactions:2 interactions with chain B- Water bridges: B:R.162, B:R.162
EDO.17: 5 residues within 4Å:- Chain A: D.215
- Chain B: I.94, S.95, T.96, W.122
8 PLIP interactions:6 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:T.96, B:T.96
- Water bridges: B:H.91, B:I.94, B:T.96, B:H.119, A:D.215, A:D.215
EDO.18: 6 residues within 4Å:- Chain A: S.93
- Chain B: V.19, H.20, L.21, H.70, Y.85
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:H.70
- Water bridges: B:Y.85, A:Q.14
EDO.19: 5 residues within 4Å:- Chain A: H.91
- Chain B: V.61, K.62, R.211
- Ligands: CDP.14
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:K.62, A:H.91
- Water bridges: B:R.65
EDO.20: 1 residues within 4Å:- Chain B: V.226
No protein-ligand interaction detected (PLIP)EDO.21: 4 residues within 4Å:- Chain B: Y.31, P.32, A.34, E.178
No protein-ligand interaction detected (PLIP)- 1 x NA: SODIUM ION(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xu, Q. et al., A structural basis for the regulatory inactivation of DnaA. J.Mol.Biol. (2009)
- Release Date
- 2008-01-15
- Peptides
- Putative DNA replication factor: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 1 x SCN: THIOCYANATE ION(Non-functional Binders)
- 2 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xu, Q. et al., A structural basis for the regulatory inactivation of DnaA. J.Mol.Biol. (2009)
- Release Date
- 2008-01-15
- Peptides
- Putative DNA replication factor: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B