SMTL ID : 3bp6.1

Crystal structure of the mouse PD-1 Mutant and PD-L2 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: A.7, I.87, G.106, A.107, E.108 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.7, A:E.108, A:E.108 Water bridges: A:G.106, A:G.106 GOL.2: 9 residues within 4Å: Chain A: S.40, N.41, Q.42 Chain B: E.10, V.11, Q.81, Y.96, L.97, T.98 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.10, B:Q.81, B:T.98, B:T.98, A:S.40 Water bridges: B:E.10, B:T.98 GOL.3: 4 residues within 4Å: Chain A: N.41, E.103 Chain B: Q.81, Y.96 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.81, A:E.103 GOL.4: 4 residues within 4Å: Chain B: W.177, K.182, E.183, L.184 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, Q. et al., Crystal structure of the mouse PD-1 A99L and PD-L2 complex. To be published

Release Date

2009-02-24

Peptides

Programmed cell death protein 1: A
Programmed cell death 1 ligand 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Programmed cell death protein 1

Programmed cell death 1 ligand 2

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