- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 8 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)
C2E.2: 11 residues within 4Å:- Chain A: C.240, S.241, R.242, D.245, L.259, T.262, G.266, L.269, L.270
- Chain D: R.198
- Ligands: C2E.3
9 PLIP interactions:7 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: A:S.241, A:R.242, A:T.262, A:T.262, D:R.198, D:R.198
- Salt bridges: A:R.242, A:D.245
- pi-Cation interactions: A:R.242
C2E.3: 6 residues within 4Å:- Chain A: S.241, R.242, S.243
- Chain D: L.197, R.198
- Ligands: C2E.2
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain D- Hydrogen bonds: A:S.241, A:R.242, A:S.243, D:R.198
- Salt bridges: D:R.198
- pi-Cation interactions: D:R.198
C2E.5: 11 residues within 4Å:- Chain B: C.240, S.241, R.242, D.245, L.259, T.262, G.266, L.269, L.270
- Chain C: R.198
- Ligands: C2E.6
9 PLIP interactions:7 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:S.241, B:R.242, B:T.262, B:T.262, C:R.198, C:R.198
- Salt bridges: B:R.242, B:D.245
- pi-Cation interactions: B:R.242
C2E.6: 6 residues within 4Å:- Chain B: S.241, R.242, S.243
- Chain C: L.197, R.198
- Ligands: C2E.5
8 PLIP interactions:3 interactions with chain B, 5 interactions with chain C- Hydrogen bonds: B:R.242, B:S.243, B:S.243, C:R.198, C:R.198, C:R.198
- Salt bridges: C:R.198
- pi-Cation interactions: C:R.198
C2E.8: 11 residues within 4Å:- Chain B: R.198
- Chain C: C.240, S.241, R.242, D.245, L.259, T.262, G.266, L.269, L.270
- Ligands: C2E.9
8 PLIP interactions:6 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:S.241, C:R.242, C:T.262, B:R.198, B:R.198
- Salt bridges: C:R.242, C:D.245
- pi-Cation interactions: C:R.242
C2E.9: 6 residues within 4Å:- Chain B: L.197, R.198
- Chain C: S.241, R.242, S.243
- Ligands: C2E.8
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain B- Hydrogen bonds: C:S.241, C:R.242, C:S.243, B:R.198
- Salt bridges: B:R.198
- pi-Cation interactions: B:R.198
C2E.11: 11 residues within 4Å:- Chain A: R.198
- Chain D: C.240, S.241, R.242, D.245, L.259, T.262, G.266, L.269, L.270
- Ligands: C2E.12
8 PLIP interactions:6 interactions with chain D, 2 interactions with chain A- Hydrogen bonds: D:S.241, D:R.242, D:T.262, A:R.198, A:R.198
- Salt bridges: D:R.242, D:D.245
- pi-Cation interactions: D:R.242
C2E.12: 6 residues within 4Å:- Chain A: L.197, R.198
- Chain D: S.241, R.242, S.243
- Ligands: C2E.11
8 PLIP interactions:3 interactions with chain D, 5 interactions with chain A- Hydrogen bonds: D:R.242, D:S.243, D:S.243, A:R.198, A:R.198, A:R.198
- Salt bridges: A:R.198
- pi-Cation interactions: A:R.198
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- De, N. et al., Phosphorylation-independent regulation of the diguanylate cyclase WspR. Plos Biol. (2008)
- Release Date
- 2008-04-01
- Peptides
- Probable two-component response regulator: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 8 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- De, N. et al., Phosphorylation-independent regulation of the diguanylate cyclase WspR. Plos Biol. (2008)
- Release Date
- 2008-04-01
- Peptides
- Probable two-component response regulator: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B