SMTL ID : 3brw.4 (3 other biounits)

Structure of the Rap-RapGAP complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: S.17, T.35, D.57 Ligands: BEF.2, GDP.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.17, A:T.35, H2O.1, H2O.1

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 9 residues within 4Å: Chain A: G.12, G.13, K.16, Y.32, P.34, T.35, G.60 Ligands: MG.1, GDP.3 No protein-ligand interaction detected (PLIP)

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 22 residues within 4Å: Chain A: S.11, G.12, G.13, V.14, G.15, K.16, S.17, A.18, F.28, V.29, E.30, K.31, Y.32, N.116, K.117, D.119, L.120, S.147, A.148, K.149 Ligands: MG.1, BEF.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.13, A:V.14, A:G.15, A:K.16, A:S.17, A:A.18, A:V.29, A:N.116, A:K.117, A:K.117, A:A.148, A:K.149 Water bridges: A:T.35, A:T.35 Salt bridges: A:K.16, A:D.119 pi-Stacking: A:F.28, A:F.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scrima, A. et al., The Rap-RapGAP complex: GTP hydrolysis without catalytic glutamine and arginine residues. Embo J. (2008)

Release Date

2008-03-11

Peptides

Ras-related protein Rap-1b: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Ras-related protein Rap-1b

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