SMTL ID : 3bs3.1

Crystal structure of a putative DNA-binding protein from Bacteroides fragilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.34, K.35, S.36, T.39 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.36, A:T.39 Water bridges: A:K.35 Salt bridges: A:K.35 SO4.3: 4 residues within 4Å: Chain B: G.34, K.35, S.36, T.39 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.36 Water bridges: B:K.35 Salt bridges: B:K.35

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: R.67, Q.68 No protein-ligand interaction detected (PLIP) EDO.4: 2 residues within 4Å: Chain B: R.67, Q.68 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuff, M.E. et al., The structure of a putative DNA-binding protein from Bacteroides fragilis. TO BE PUBLISHED

Release Date

2008-01-15

Peptides

Putative DNA-binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative DNA-binding protein