SMTL ID : 3bs6.2 (2 other biounits)

1.8 Angstrom crystal structure of the periplasmic domain of the membrane insertase YidC

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.1: 13 residues within 4Å: Chain A: R.20, Q.56, R.73, F.138, Q.140, N.190, T.216, N.218, Y.220, K.234, S.235, Q.236, P.237 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.20, A:R.73, A:K.234 Water bridges: A:Q.140, A:Q.140, A:Q.140

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 6 residues within 4Å: Chain A: N.77, V.78, E.79, Y.83, P.95, T.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.79, A:E.79, A:Y.83, A:Y.83 Water bridges: A:T.97

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: Y.32, Y.204, P.256 No protein-ligand interaction detected (PLIP) EDO.4: 3 residues within 4Å: Chain A: S.7, K.9, V.84 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.7, A:S.7 Water bridges: A:K.9 EDO.5: 3 residues within 4Å: Chain A: L.5, S.7, D.81 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.16 EDO.6: 2 residues within 4Å: Chain A: A.31, Y.32 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ravaud, S. et al., The Crystal Structure of the Periplasmic Domain of the Escherichia coli Membrane Protein Insertase YidC Contains a Substrate Binding Cleft. J.Biol.Chem. (2008)

Release Date

2008-02-12

Peptides

Inner membrane protein oxaA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Inner membrane protein oxaA

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