SMTL ID : 3bt6.1

Crystal Structure of Influenza B Virus Hemagglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: S.12, P.13, N.25 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain A: K.45, E.289, N.301 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 3 residues within 4Å: Chain C: S.12, P.13, N.25 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 3 residues within 4Å: Chain C: K.45, E.289, N.301 No protein-ligand interaction detected (PLIP) NAG-NAG.17: 3 residues within 4Å: Chain E: S.12, P.13, N.25 No protein-ligand interaction detected (PLIP) NAG-NAG.19: 3 residues within 4Å: Chain E: K.45, E.289, N.301 No protein-ligand interaction detected (PLIP)

6 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NDG.2: 5 residues within 4Å: Chain A: N.145, T.147, N.148, G.149, N.150 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.147 NAG-NDG.4: 3 residues within 4Å: Chain A: I.30, N.330 Chain B: W.21 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.21, B:T.49 NAG-NDG.10: 5 residues within 4Å: Chain C: N.145, T.147, N.148, G.149, N.150 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.147 NAG-NDG.12: 3 residues within 4Å: Chain C: I.30, N.330 Chain D: W.21 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:W.21, D:T.49 NAG-NDG.18: 5 residues within 4Å: Chain E: N.145, T.147, N.148, G.149, N.150 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:T.147 NAG-NDG.20: 3 residues within 4Å: Chain E: I.30, N.330 Chain F: W.21 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:W.21, F:T.49

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain A: N.123, Q.268 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.123 NAG.6: 1 residues within 4Å: Chain A: N.163 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.163 NAG.7: 3 residues within 4Å: Chain B: K.143, N.145, T.147 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.143, B:T.147, B:T.147, B:T.147 NAG.13: 2 residues within 4Å: Chain C: N.123, Q.268 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.123 NAG.14: 1 residues within 4Å: Chain C: N.163 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.163 NAG.15: 3 residues within 4Å: Chain D: K.143, N.145, T.147 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:K.143, D:T.147, D:T.147, D:T.147 NAG.21: 2 residues within 4Å: Chain E: N.123, Q.268 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.123 NAG.22: 1 residues within 4Å: Chain E: N.163 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.163 NAG.23: 3 residues within 4Å: Chain F: K.143, N.145, T.147 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:K.143, F:T.147, F:T.147, F:T.147

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 8 residues within 4Å: Chain B: K.123, D.132 Chain D: K.123, D.132 Chain F: K.123, D.132 Ligands: SO4.16, SO4.24 4 PLIP interactions: 2 interactions with chain F, 1 interactions with chain D, 1 interactions with chain B Hydrogen bonds: F:D.132 Salt bridges: F:K.123, D:K.123, B:K.123 SO4.16: 8 residues within 4Å: Chain B: K.123, D.132 Chain D: K.123, D.132 Chain F: K.123, D.132 Ligands: SO4.8, SO4.24 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain F, 1 interactions with chain D Hydrogen bonds: B:D.132 Salt bridges: B:K.123, F:K.123, D:K.123 SO4.24: 8 residues within 4Å: Chain B: K.123, D.132 Chain D: K.123, D.132 Chain F: K.123, D.132 Ligands: SO4.8, SO4.16 4 PLIP interactions: 2 interactions with chain D, 1 interactions with chain F, 1 interactions with chain B Hydrogen bonds: D:D.132 Salt bridges: D:K.123, F:K.123, B:K.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Q. et al., Crystal structure of unliganded influenza B virus hemagglutinin. J.Virol. (2008)

Release Date

2008-05-27

Peptides

Influenza B hemagglutinin (HA): ACE
Influenza B hemagglutinin (HA): BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

Influenza B hemagglutinin (HA)

Influenza B hemagglutinin (HA)