SMTL ID : 3btp.1

Crystal structure of Agrobacterium tumefaciens VirE2 in complex with its chaperone VirE1: a novel fold and implications for DNA binding

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

3 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.1: 5 residues within 4Å: Chain A: P.163, K.248, Y.250 Chain B: H.32 Ligands: NH4.4 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.248, A:Y.250, B:H.32 NH4.3: 3 residues within 4Å: Chain A: E.167 Chain B: Q.33, F.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.167 NH4.4: 7 residues within 4Å: Chain A: K.248 Chain B: H.32, Q.33, S.34, N.35, G.36 Ligands: NH4.1 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.248, A:K.248, B:G.36

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 7 residues within 4Å: Chain A: D.154, G.155, V.156, R.168, N.377 Chain B: E.48, L.52 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.155, A:R.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dym, O. et al., Crystal structure of the Agrobacterium virulence complex VirE1-VirE2 reveals a flexible protein that can accommodate different partners. Proc.Natl.Acad.Sci.Usa (2008)

Release Date

2008-08-19

Peptides

Single-strand DNA-binding protein: A
Protein virE1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Single-strand DNA-binding protein

Protein virE1