SMTL ID : 3bu0.1

crystal structure of human ABH2 cross-linked to dsDNA with cofactors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.1: 13 residues within 4Å: Chain A: L.102, N.104, Y.106, I.113, H.116, D.118, F.140, H.181, R.193, N.195, R.199 Chain B: X.7 Ligands: MN.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.140 Hydrogen bonds: A:N.104, A:Y.106, A:S.131, A:S.131 Water bridges: A:R.199 Salt bridges: A:H.116, A:R.193, A:R.199

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: H.116, D.118, H.181, R.199 Ligands: AKG.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.116, A:D.118, A:D.118, A:H.181, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, C.G. et al., Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA. Nature (2008)

Release Date

2008-04-22

Peptides

Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2