SMTL ID : 3bvb.1

Cystal structure of HIV-1 Active Site Mutant D25N and inhibitor Darunavir

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 1 residues within 4Å: Chain A: D.60 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.60 Water bridges: A:R.41

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain B: W.6 Ligand excluded by PLIP

1 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.3: 21 residues within 4Å: Chain A: R.8, N.25, G.27, A.28, D.30, V.32, I.47, G.48, G.49, P.81, V.82, I.84 Chain B: N.25, G.27, A.28, D.29, D.30, G.48, G.49, I.50, I.84 18 PLIP interactions: 10 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:I.47, A:P.81, A:V.82, A:I.84, B:I.84 Hydrogen bonds: A:R.8, A:N.25, A:D.30, A:D.30, B:N.25, B:N.25, B:G.27, B:D.29, B:D.30 Water bridges: B:I.50, B:I.50

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain B: W.42, K.55, V.56, R.57 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.56, B:R.57 Water bridges: B:V.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sayer, J.M. et al., Effect of the Active Site D25N Mutation on the Structure, Stability, and Ligand Binding of the Mature HIV-1 Protease. J.Biol.Chem. (2008)

Release Date

2008-04-01

Peptides

Protease (Retropepsin): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease (Retropepsin)

Related Entries With Identical Sequence