SMTL ID : 3bvq.1

Crystal Structure of Apo NotI Restriction Endonuclease

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: C.42, C.55, C.65, C.81 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.42, A:C.55, A:C.65, A:C.81 FE.3: 4 residues within 4Å: Chain B: C.42, C.55, C.65, C.81 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.42, B:C.55, B:C.65, B:C.81

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: E.156, F.157, S.158, K.245 Chain B: K.236 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Salt bridges: B:K.236, A:K.245 Hydrogen bonds: A:E.156, A:S.158 SO4.4: 6 residues within 4Å: Chain A: K.236 Chain B: E.156, F.157, S.158, Q.241, K.245 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:K.236, B:K.245 Hydrogen bonds: B:S.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lambert, A.R. et al., Structures of the Rare-Cutting Restriction Endonuclease NotI Reveal a Unique Metal Binding Fold Involved in DNA Binding. Structure (2008)

Release Date

2008-01-22

Peptides

NotI restriction endonuclease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NotI restriction endonuclease

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