SMTL ID : 3bw1.1

Crystal structure of homomeric yeast Lsm3 exhibiting novel octameric ring organisation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-octamer

Ligands

16 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 2 residues within 4Å: Chain A: M.8, T.10 Ligand excluded by PLIP MPD.2: 6 residues within 4Å: Chain A: L.19, A.39, F.40 Chain B: H.7, E.9, T.10 Ligand excluded by PLIP MPD.3: 6 residues within 4Å: Chain A: H.7, E.9, T.10 Chain F: Q.38, A.39, F.40 Ligand excluded by PLIP MPD.5: 2 residues within 4Å: Chain B: M.8, T.10 Ligand excluded by PLIP MPD.6: 2 residues within 4Å: Chain C: M.8, T.10 Ligand excluded by PLIP MPD.7: 6 residues within 4Å: Chain C: L.19, A.39, F.40 Chain D: H.7, E.9, T.10 Ligand excluded by PLIP MPD.8: 6 residues within 4Å: Chain C: H.7, E.9, T.10 Chain H: Q.38, A.39, F.40 Ligand excluded by PLIP MPD.10: 2 residues within 4Å: Chain D: M.8, T.10 Ligand excluded by PLIP MPD.11: 2 residues within 4Å: Chain E: M.8, T.10 Ligand excluded by PLIP MPD.12: 6 residues within 4Å: Chain E: L.19, A.39, F.40 Chain F: H.7, E.9, T.10 Ligand excluded by PLIP MPD.13: 6 residues within 4Å: Chain D: Q.38, A.39, F.40 Chain E: H.7, E.9, T.10 Ligand excluded by PLIP MPD.15: 2 residues within 4Å: Chain F: M.8, T.10 Ligand excluded by PLIP MPD.16: 2 residues within 4Å: Chain G: M.8, T.10 Ligand excluded by PLIP MPD.17: 6 residues within 4Å: Chain G: L.19, A.39, F.40 Chain H: H.7, E.9, T.10 Ligand excluded by PLIP MPD.18: 6 residues within 4Å: Chain B: Q.38, A.39, F.40 Chain G: H.7, E.9, T.10 Ligand excluded by PLIP MPD.20: 2 residues within 4Å: Chain H: M.8, T.10 Ligand excluded by PLIP

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain B: G.29, Y.56 No protein-ligand interaction detected (PLIP) SO4.9: 2 residues within 4Å: Chain D: G.29, Y.56 No protein-ligand interaction detected (PLIP) SO4.14: 2 residues within 4Å: Chain F: G.29, Y.56 No protein-ligand interaction detected (PLIP) SO4.19: 2 residues within 4Å: Chain H: G.29, Y.56 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Naidoo, N. et al., Crystal structure of Lsm3 octamer from Saccharomyces cerevisiae: implications for Lsm ring organisation and recruitment. J.Mol.Biol. (2008)

Release Date

2008-03-25

Peptides

U6 snRNA-associated Sm-like protein LSm3: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

U6 snRNA-associated Sm-like protein LSm3