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SMTL ID : 3bw2.1
Crystal structures and site-directed mutagenesis study of nitroalkane oxidase from Streptomyces ansochromogenes
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.10 Å
Oligo State
homo-dimer
Ligands
2 x
FMN
:
FLAVIN MONONUCLEOTIDE
(Non-covalent)
FMN.1:
21 residues within 4Å:
Chain A:
A.16
,
P.17
,
M.18
,
A.19
,
N.68
,
F.70
,
H.129
,
Q.172
,
E.175
,
A.176
,
G.177
,
G.178
,
G.215
,
G.216
,
Q.235
,
L.236
,
G.237
,
T.238
,
L.241
,
W.320
,
G.322
16
PLIP interactions
:
16 interactions with chain A
Hydrophobic interactions:
A:L.241
,
A:W.320
Hydrogen bonds:
A:A.19
,
A:N.68
,
A:N.68
,
A:Q.172
,
A:G.177
,
A:G.216
,
A:Q.235
,
A:G.237
,
A:T.238
,
A:T.238
Water bridges:
A:H.129
,
A:T.151
,
A:I.217
,
A:I.217
FMN.3:
21 residues within 4Å:
Chain B:
A.16
,
P.17
,
M.18
,
A.19
,
N.68
,
F.70
,
H.129
,
Q.172
,
E.175
,
A.176
,
G.177
,
G.178
,
G.215
,
G.216
,
Q.235
,
L.236
,
G.237
,
T.238
,
L.241
,
W.320
,
G.322
17
PLIP interactions
:
17 interactions with chain B
Hydrophobic interactions:
B:L.241
,
B:W.320
Hydrogen bonds:
B:A.19
,
B:N.68
,
B:N.68
,
B:Q.172
,
B:G.177
,
B:G.216
,
B:Q.235
,
B:G.237
,
B:T.238
Water bridges:
B:H.129
,
B:T.151
,
B:T.151
,
B:I.217
,
B:I.217
,
B:T.238
2 x
MPD
:
(4S)-2-METHYL-2,4-PENTANEDIOL
(Non-functional Binders)
MPD.2:
5 residues within 4Å:
Chain A:
Y.111
,
D.112
,
L.115
,
D.134
,
V.137
3
PLIP interactions
:
3 interactions with chain A
Hydrophobic interactions:
A:D.134
,
A:V.137
Hydrogen bonds:
A:D.112
MPD.4:
5 residues within 4Å:
Chain B:
Y.111
,
D.112
,
L.115
,
D.134
,
V.137
3
PLIP interactions
:
3 interactions with chain B
Hydrophobic interactions:
B:D.134
,
B:V.137
Hydrogen bonds:
B:D.112
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Li, Y.H. et al., Crystal structure and site-directed mutagenesis of a nitroalkane oxidase from Streptomyces ansochromogenes. Biochem.Biophys.Res.Commun. (2011)
Release Date
2009-01-13
Peptides
2-nitropropane dioxygenase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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2-nitropropane dioxygenase
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