SMTL ID : 3bzj.2 (1 other biounit)

UVDE K229L

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.221, H.224, H.265 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.224, A:H.265, H2O.2 MN.6: 3 residues within 4Å: Chain B: D.221, H.224, H.265 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.224, B:H.265, H2O.6

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: L.42, R.43, H.46, R.51, K.55 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.43 Salt bridges: A:H.46, A:R.51, A:K.55 SO4.3: 7 residues within 4Å: Chain A: L.44, H.90, R.139 Chain B: L.44, H.90, R.139 Ligands: SO4.8 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Salt bridges: A:H.90, A:R.139, B:H.90, B:R.139 SO4.4: 1 residues within 4Å: Chain A: R.65 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.65 SO4.5: 3 residues within 4Å: Chain A: K.259, K.260, R.261 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.261 Salt bridges: A:R.261 SO4.7: 5 residues within 4Å: Chain B: L.42, R.43, H.46, R.51, K.55 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.43 Salt bridges: B:H.46, B:R.51, B:K.55 SO4.8: 7 residues within 4Å: Chain A: L.44, H.90, R.139 Chain B: L.44, H.90, R.139 Ligands: SO4.3 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Salt bridges: A:H.90, A:R.139, B:H.90, B:R.139 SO4.9: 1 residues within 4Å: Chain B: R.65 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.65 SO4.10: 3 residues within 4Å: Chain B: K.259, K.260, R.261 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.261 Salt bridges: B:R.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meulenbroek, E.M. et al., Involvement of a carboxylated lysine in UV damage endonuclease. Protein Sci. (2009)

Release Date

2008-12-09

Peptides

UV endonuclease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

UV endonuclease

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