SMTL ID : 3bzw.1 (2 other biounits)

Crystal structure of a putative lipase from Bacteroides thetaiotaomicron

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

homo-hexamer

Ligands

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: D.34, S.35, S.67, G.68, T.98, N.99, H.242 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.98 Hydrogen bonds: A:S.35, A:G.68, A:N.99 Salt bridges: A:H.242 ACT.2: 7 residues within 4Å: Chain B: D.34, S.35, S.67, G.68, T.98, N.99, H.242 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:T.98 Hydrogen bonds: B:S.35, B:G.68, B:N.99 Salt bridges: B:H.242 ACT.4: 7 residues within 4Å: Chain C: D.34, S.35, S.67, G.68, T.98, N.99, H.242 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:T.98 Hydrogen bonds: C:S.35, C:S.35, C:G.68, C:N.99 Salt bridges: C:H.242 ACT.5: 7 residues within 4Å: Chain D: D.34, S.35, S.67, G.68, T.98, N.99, H.242 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:T.98 Hydrogen bonds: D:S.35, D:S.35, D:G.68, D:N.99 Salt bridges: D:H.242 ACT.7: 7 residues within 4Å: Chain E: D.34, S.35, S.67, G.68, T.98, N.99, H.242 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:T.98 Hydrogen bonds: E:S.35, E:S.35, E:G.68, E:N.99 Salt bridges: E:H.242 ACT.8: 7 residues within 4Å: Chain F: D.34, S.35, S.67, G.68, T.98, N.99, H.242 6 PLIP interactions: 6 interactions with chain F Hydrophobic interactions: F:T.98 Hydrogen bonds: F:S.35, F:S.35, F:G.68, F:N.99 Salt bridges: F:H.242

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain B: Q.117, M.128, V.129, T.130 Chain F: R.144 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain F Hydrogen bonds: B:Q.117, B:T.130, B:T.130 Water bridges: B:T.130 Salt bridges: B:K.127, F:R.144 SO4.6: 4 residues within 4Å: Chain A: R.144 Chain D: Q.117, V.129, T.130 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain D Salt bridges: A:R.144 Hydrogen bonds: D:Q.117, D:T.130, D:T.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palani, K. et al., Crystal structure of a putative lipase from Bacteroides thetaiotaomicron. To be Published

Release Date

2008-02-05

Peptides

Putative lipase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Putative lipase

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