SMTL ID : 3c02.1

X-ray structure of the aquaglyceroporin from Plasmodium falciparum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-tetramer

Ligands

4 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 6 residues within 4Å: Chain A: F.100, S.104, Y.107, H.111, L.203, I.206 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.100 Hydrogen bonds: A:H.111 BOG.7: 6 residues within 4Å: Chain B: F.100, S.104, Y.107, H.111, L.203, I.206 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.100 Hydrogen bonds: B:H.111 BOG.13: 6 residues within 4Å: Chain C: F.100, S.104, Y.107, H.111, L.203, I.206 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.100 Hydrogen bonds: C:H.111 BOG.19: 6 residues within 4Å: Chain D: F.100, S.104, Y.107, H.111, L.203, I.206 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:F.100 Hydrogen bonds: D:H.111

20 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: W.43, S.127, N.129, P.130, G.185, G.186, T.188, G.189 Ligands: GOL.5 Ligand excluded by PLIP GOL.3: 6 residues within 4Å: Chain A: W.50, I.177, G.189, F.190, A.191, R.196 Ligand excluded by PLIP GOL.4: 8 residues within 4Å: Chain A: L.23, V.54, H.68, L.69, N.70, V.73, L.148, N.193 Ligand excluded by PLIP GOL.5: 5 residues within 4Å: Chain A: F.34, N.129 Chain C: T.37, G.38 Ligands: GOL.2 Ligand excluded by PLIP GOL.6: 7 residues within 4Å: Chain A: G.66, A.67, H.68, V.73, L.77, I.152, V.156 Ligand excluded by PLIP GOL.8: 9 residues within 4Å: Chain B: W.43, S.127, N.129, P.130, G.185, G.186, T.188, G.189 Ligands: GOL.11 Ligand excluded by PLIP GOL.9: 6 residues within 4Å: Chain B: W.50, I.177, G.189, F.190, A.191, R.196 Ligand excluded by PLIP GOL.10: 8 residues within 4Å: Chain B: L.23, V.54, H.68, L.69, N.70, V.73, L.148, N.193 Ligand excluded by PLIP GOL.11: 5 residues within 4Å: Chain B: F.34, N.129 Chain D: T.37, G.38 Ligands: GOL.8 Ligand excluded by PLIP GOL.12: 7 residues within 4Å: Chain B: G.66, A.67, H.68, V.73, L.77, I.152, V.156 Ligand excluded by PLIP GOL.14: 9 residues within 4Å: Chain C: W.43, S.127, N.129, P.130, G.185, G.186, T.188, G.189 Ligands: GOL.17 Ligand excluded by PLIP GOL.15: 6 residues within 4Å: Chain C: W.50, I.177, G.189, F.190, A.191, R.196 Ligand excluded by PLIP GOL.16: 8 residues within 4Å: Chain C: L.23, V.54, H.68, L.69, N.70, V.73, L.148, N.193 Ligand excluded by PLIP GOL.17: 5 residues within 4Å: Chain B: T.37, G.38 Chain C: F.34, N.129 Ligands: GOL.14 Ligand excluded by PLIP GOL.18: 7 residues within 4Å: Chain C: G.66, A.67, H.68, V.73, L.77, I.152, V.156 Ligand excluded by PLIP GOL.20: 9 residues within 4Å: Chain D: W.43, S.127, N.129, P.130, G.185, G.186, T.188, G.189 Ligands: GOL.23 Ligand excluded by PLIP GOL.21: 6 residues within 4Å: Chain D: W.50, I.177, G.189, F.190, A.191, R.196 Ligand excluded by PLIP GOL.22: 8 residues within 4Å: Chain D: L.23, V.54, H.68, L.69, N.70, V.73, L.148, N.193 Ligand excluded by PLIP GOL.23: 5 residues within 4Å: Chain A: T.37, G.38 Chain D: F.34, N.129 Ligands: GOL.20 Ligand excluded by PLIP GOL.24: 7 residues within 4Å: Chain D: G.66, A.67, H.68, V.73, L.77, I.152, V.156 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Newby, Z.E. et al., Crystal structure of the aquaglyceroporin PfAQP from the malarial parasite Plasmodium falciparum. Nat.Struct.Mol.Biol. (2008)

Release Date

2008-05-27

Peptides

Aquaglyceroporin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Membrane

We predict this structure to be a membrane protein.
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Aquaglyceroporin