SMTL ID : 3c0o.1

Crystal structure of the proaerolysin mutant Y221G complexed with mannose-6-phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 1 residues within 4Å: Chain A: R.336 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.336, A:R.336 Salt bridges: A:R.336

2 x M6P: 6-O-phosphono-alpha-D-mannopyranose(Non-covalent)

M6P.2: 6 residues within 4Å: Chain A: A.126, W.127, F.321, R.323, W.324, R.336 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.127, A:W.324 Water bridges: A:V.128 Salt bridges: A:R.323, A:R.323, A:R.336 M6P.3: 5 residues within 4Å: Chain B: A.126, W.127, R.323, W.324, R.336 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:W.127, B:R.323, B:W.324, B:W.324 Salt bridges: B:R.323, B:R.323, B:R.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Degiacomi, M.T. et al., Molecular assembly of the aerolysin pore reveals a swirling membrane-insertion mechanism. Nat.Chem.Biol. (2013)

Release Date

2008-02-12

Peptides

Aerolysin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aerolysin

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