SMTL ID : 3c19.1

Crystal structure of protein MK0293 from Methanopyrus kandleri AV19

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-trimer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: H.44, P.47 Chain B: H.44, P.47 Chain C: H.44, P.47 Ligands: PO4.3, PO4.5 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Salt bridges: B:H.44, C:H.44, A:H.44 PO4.3: 8 residues within 4Å: Chain A: H.44, P.47 Chain B: H.44, P.47 Chain C: H.44, P.47 Ligands: PO4.1, PO4.5 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Salt bridges: B:H.44, C:H.44, A:H.44 PO4.5: 8 residues within 4Å: Chain A: H.44, P.47 Chain B: H.44, P.47 Chain C: H.44, P.47 Ligands: PO4.1, PO4.3 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Salt bridges: B:H.44, C:H.44, A:H.44

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: V.16, T.17, V.18, G.88, D.90 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.18, A:V.18, A:D.90, A:D.90 Water bridges: A:S.86, A:G.88 GOL.4: 5 residues within 4Å: Chain B: V.16, T.17, V.18, G.88, D.90 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.17, B:V.18, B:V.18, B:D.90, B:D.90 Water bridges: B:S.86, B:G.88 GOL.6: 5 residues within 4Å: Chain C: V.16, T.17, V.18, G.88, D.90 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:T.17, C:V.18, C:V.18, C:D.90, C:D.90 Water bridges: C:S.86, C:G.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal structure of protein MK0293 from Methanopyrus kandleri AV19. To be Published

Release Date

2008-02-05

Peptides

Uncharacterized protein MK0293: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Uncharacterized protein MK0293