SMTL ID : 3c1q.1

The three-dimensional structure of the cytoplasmic domains of EpsF from the Type 2 Secretion System of Vibrio cholerae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: E.97, D.101 Chain B: E.43 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:E.43, A:E.97, A:D.101, H2O.1, H2O.7 CA.5: 3 residues within 4Å: Chain A: E.43 Chain B: E.97, D.101 5 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:E.43, B:E.97, B:D.101, H2O.1, H2O.7

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: R.46, Y.71, H.73 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: S.81 Ligands: PE5.4 No protein-ligand interaction detected (PLIP)

1 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)

PE5.4: 5 residues within 4Å: Chain A: E.77, R.80, S.81, A.84 Ligands: NA.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.77, A:R.80, A:S.81 Water bridges: A:E.77, A:E.77, A:E.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., The three-dimensional structure of the cytoplasmic domains of EpsF from the type 2 secretion system of Vibrio cholerae. J.Struct.Biol. (2009)

Release Date

2009-02-03

Peptides

General secretion pathway protein F: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

General secretion pathway protein F

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