SMTL ID : 3c3p.2 (1 other biounit)

Crystal structure of a methyltransferase (NP_951602.1) from Geobacter sulfurreducens at 1.90 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

26 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: K.55, Q.56, P.57, Q.58, D.128 Ligand excluded by PLIP EDO.2: 4 residues within 4Å: Chain A: I.37, P.38, G.66, N.93 Ligand excluded by PLIP EDO.3: 4 residues within 4Å: Chain A: D.116, G.119, I.120 Ligands: EDO.4 Ligand excluded by PLIP EDO.4: 4 residues within 4Å: Chain A: D.116, G.119, R.145 Ligands: EDO.3 Ligand excluded by PLIP EDO.5: 8 residues within 4Å: Chain A: D.135, N.160, A.161, L.162, R.163, R.164, L.179, R.180 Ligand excluded by PLIP EDO.6: 7 residues within 4Å: Chain A: P.38, I.39, V.40, D.133, D.135, N.160, G.165 Ligand excluded by PLIP EDO.7: 3 residues within 4Å: Chain A: Y.49, R.76 Chain B: F.193 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: F.192, F.193, L.209 Chain B: P.19, R.46 Ligand excluded by PLIP EDO.9: 6 residues within 4Å: Chain A: A.21, D.22, V.25, R.42, R.46, W.73 Ligand excluded by PLIP EDO.10: 5 residues within 4Å: Chain A: R.125, D.126, R.148, C.149, L.150 Ligand excluded by PLIP EDO.11: 3 residues within 4Å: Chain A: H.185, R.188, R.189 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain A: C.134, D.135, F.137, N.138 Ligand excluded by PLIP EDO.13: 5 residues within 4Å: Chain A: L.179, R.180, E.181, H.184 Chain B: Y.13 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain B: K.55, Q.56, P.57, Q.58, D.128 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain B: I.37, P.38, G.66, N.93 Ligand excluded by PLIP EDO.17: 4 residues within 4Å: Chain B: D.116, G.119, I.120 Ligands: EDO.18 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain B: D.116, G.119, R.145 Ligands: EDO.17 Ligand excluded by PLIP EDO.19: 8 residues within 4Å: Chain B: D.135, N.160, A.161, L.162, R.163, R.164, L.179, R.180 Ligand excluded by PLIP EDO.20: 7 residues within 4Å: Chain B: P.38, I.39, V.40, D.133, D.135, N.160, G.165 Ligand excluded by PLIP EDO.21: 3 residues within 4Å: Chain A: F.193 Chain B: Y.49, R.76 Ligand excluded by PLIP EDO.22: 5 residues within 4Å: Chain A: P.19, R.46 Chain B: F.192, F.193, L.209 Ligand excluded by PLIP EDO.23: 6 residues within 4Å: Chain B: A.21, D.22, V.25, R.42, R.46, W.73 Ligand excluded by PLIP EDO.24: 5 residues within 4Å: Chain B: R.125, D.126, R.148, C.149, L.150 Ligand excluded by PLIP EDO.25: 3 residues within 4Å: Chain B: H.185, R.188, R.189 Ligand excluded by PLIP EDO.26: 4 residues within 4Å: Chain B: C.134, D.135, F.137, N.138 Ligand excluded by PLIP EDO.27: 5 residues within 4Å: Chain A: Y.13 Chain B: L.179, R.180, E.181, H.184 Ligand excluded by PLIP

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.14: 6 residues within 4Å: Chain A: R.53, R.76, A.77, I.78, S.79, R.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.109 Water bridges: A:R.53, A:R.53 PEG.28: 6 residues within 4Å: Chain B: R.53, R.76, A.77, I.78, S.79, R.109 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.109 Water bridges: B:R.53, B:R.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a methyltransferase (NP_951602.1) from Geobacter sulfurreducens at 1.90 A resolution. To be published

Release Date

2008-02-05

Peptides

Methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

Methyltransferase

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