SMTL ID : 3c4u.1

Structure of class II fructose-biphosphate aldolase from helicobacter pylori

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 8 residues within 4Å: Chain A: Q.47, H.80, D.82, M.102, E.132, H.210, K.251, N.253 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.132, A:K.251, A:N.253 NA.3: 8 residues within 4Å: Chain B: Q.47, H.80, D.82, M.102, E.132, H.210, K.251, N.253 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.82, B:D.82, B:H.83, B:K.251, B:N.253

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.83, E.134, H.180, H.210 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.83, A:E.134, A:H.180, A:H.210, H2O.2 ZN.4: 4 residues within 4Å: Chain B: H.83, E.134, H.180, H.210 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.83, B:E.134, B:H.180, B:H.210, H2O.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fonvielle, M. et al., Synthesis and Biochemical Evaluation of Selective Inhibitors of Class II Fructose Bisphosphate Aldolases: Towards New Synthetic Antibiotics. Chemistry (2008)

Release Date

2008-08-26

Peptides

Fructose-bisphosphate aldolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fructose-bisphosphate aldolase

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