SMTL ID : 3c5c.1 (3 other biounits)

Crystal structure of human Ras-like, family 12 protein in complex with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.35, D.75 Ligands: GDP.3 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.35, H2O.1, H2O.1, H2O.1, H2O.1 MG.2: 1 residues within 4Å: Chain A: D.56 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.56, H2O.2, H2O.3, H2O.3

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 19 residues within 4Å: Chain A: R.29, R.30, G.31, A.32, G.33, K.34, S.35, A.36, F.46, S.48, Y.50, N.135, K.136, D.138, M.139, S.165, A.166, C.167 Ligands: MG.1 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.31, A:A.32, A:G.33, A:K.34, A:S.35, A:A.36, A:S.48, A:Y.50, A:N.135, A:K.136, A:K.136, A:A.166, A:C.167 Water bridges: A:K.34, A:K.34, A:K.34, A:S.35, A:S.35, A:Y.50, A:Y.50 Salt bridges: A:K.34, A:D.138 pi-Stacking: A:F.46, A:F.46

1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 3 residues within 4Å: Chain A: R.143, T.146, K.147 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, L. et al., Crystal structure of human Ras-like, family 12 protein in complex with GDP. To be Published

Release Date

2008-02-12

Peptides

RAS-like protein 12: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RAS-like protein 12

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