SMTL ID : 3c5h.1

Crystal structure of the Ras homolog domain of human GRLF1 (p190RhoGAP)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.42, S.62, E.101 Ligands: GNP.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.42, A:E.101, H2O.4, H2O.4 MG.2: 3 residues within 4Å: Chain A: E.12, L.14, D.254 No protein-ligand interaction detected (PLIP)

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.3: 20 residues within 4Å: Chain A: K.34, G.38, I.39, G.40, K.41, S.42, C.43, L.58, D.59, H.60, S.62, E.101, T.103, K.207, D.209, E.210, S.235, A.236, R.237 Ligands: MG.1 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:I.39, A:G.40, A:K.41, A:K.41, A:S.42, A:C.43, A:H.60, A:S.62, A:S.62, A:T.103, A:K.207, A:K.207, A:A.236, A:R.237 Water bridges: A:G.29, A:K.41, A:S.42, A:S.42, A:S.42, A:L.58, A:S.62, A:S.62, A:E.104 Salt bridges: A:D.209

5 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 4 residues within 4Å: Chain A: P.121, Y.122, I.123, F.186 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain A: V.49, R.50, M.138 No protein-ligand interaction detected (PLIP) UNX.6: 1 residues within 4Å: Chain A: E.104 No protein-ligand interaction detected (PLIP) UNX.7: 4 residues within 4Å: Chain A: N.241, V.242, D.243, L.244 No protein-ligand interaction detected (PLIP) UNX.8: 3 residues within 4Å: Chain A: F.48, V.85, D.243 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, L. et al., Crystal structure of the Ras homolog domain of human GRLF1 (p190RhoGAP). To be Published

Release Date

2008-02-12

Peptides

Glucocorticoid receptor DNA-binding factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucocorticoid receptor DNA-binding factor 1