- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 5 x CA: CALCIUM ION(Non-covalent)
CA.2: 2 residues within 4Å:- Chain A: E.4
- Ligands: HEM.3
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.4, H2O.2
CA.5: 1 residues within 4Å:- Chain B: D.12
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.12, H2O.9
CA.6: 2 residues within 4Å:- Chain B: D.2, E.4
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.2, B:D.2, B:E.4
CA.7: 1 residues within 4Å:- Chain B: D.28
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.28, H2O.6
CA.12: 2 residues within 4Å:- Chain D: D.5, E.8
5 PLIP interactions:2 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:D.5, D:E.8, H2O.17, H2O.19, H2O.20
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
HEM.3: 19 residues within 4Å:- Chain A: E.4, M.7, L.10, N.11, L.14, M.33, P.45, P.46, F.61, G.64, F.65, L.68, L.94, C.98, C.101, H.102, Y.105, R.106
- Ligands: CA.2
15 PLIP interactions:15 interactions with chain A,- Hydrophobic interactions: A:M.7, A:L.10, A:L.10, A:L.10, A:P.45, A:F.65, A:F.65, A:F.65, A:L.68, A:L.94, A:R.106
- pi-Stacking: A:H.102, A:H.102
- pi-Cation interactions: A:H.102
- Metal complexes: A:H.102
HEM.8: 19 residues within 4Å:- Chain B: L.3, E.4, M.7, L.10, N.11, L.14, M.33, P.45, P.46, F.61, G.64, F.65, L.68, L.94, C.98, C.101, H.102, Y.105, R.106
16 PLIP interactions:16 interactions with chain B,- Hydrophobic interactions: B:M.7, B:L.10, B:L.10, B:L.14, B:P.45, B:F.65, B:F.65, B:F.65, B:L.68, B:L.68, B:L.94, B:R.106
- Water bridges: B:R.106, B:R.106
- pi-Stacking: B:H.102
- Metal complexes: B:H.102
HEM.10: 17 residues within 4Å:- Chain C: L.3, E.4, M.7, N.11, L.14, P.45, P.46, F.61, F.65, L.68, L.94, T.97, C.98, C.101, H.102, Y.105, R.106
15 PLIP interactions:15 interactions with chain C,- Hydrophobic interactions: C:L.3, C:M.7, C:P.45, C:F.61, C:F.65, C:L.68, C:L.94, C:R.106
- Hydrogen bonds: C:E.4
- pi-Stacking: C:H.102, C:H.102
- pi-Cation interactions: C:H.102, C:H.102, C:R.106
- Metal complexes: C:H.102
HEM.13: 18 residues within 4Å:- Chain D: L.3, E.4, M.7, L.10, N.11, L.14, M.33, P.45, P.46, F.61, F.65, L.68, L.94, C.98, C.101, H.102, Y.105, R.106
17 PLIP interactions:17 interactions with chain D,- Hydrophobic interactions: D:E.4, D:M.7, D:L.10, D:L.14, D:P.45, D:F.61, D:F.65, D:L.68, D:L.68, D:L.94, D:R.106, D:R.106
- Salt bridges: D:R.106
- pi-Stacking: D:H.102, D:H.102, D:H.102
- Metal complexes: D:H.102
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Salgado, E.N. et al., Metal-mediated self-assembly of protein superstructures: influence of secondary interactions on protein oligomerization and aggregation. J.Am.Chem.Soc. (2008)
- Release Date
- 2008-05-06
- Peptides
- Soluble cytochrome b562: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.87 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 5 x CA: CALCIUM ION(Non-covalent)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Salgado, E.N. et al., Metal-mediated self-assembly of protein superstructures: influence of secondary interactions on protein oligomerization and aggregation. J.Am.Chem.Soc. (2008)
- Release Date
- 2008-05-06
- Peptides
- Soluble cytochrome b562: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D