- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 5 x CA: CALCIUM ION(Non-covalent)
CA.2: 2 residues within 4Å:- Chain A: E.4
- Ligands: HEM.3
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.4
CA.5: 1 residues within 4Å:- Chain B: D.12
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.12, B:D.12, H2O.8, H2O.9
CA.6: 2 residues within 4Å:- Chain B: D.2, E.4
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.2, B:D.2, B:E.4, H2O.7
CA.7: 1 residues within 4Å:- Chain B: D.28
No protein-ligand interaction detected (PLIP)CA.12: 2 residues within 4Å:- Chain D: E.4, D.5
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.4, D:E.4, D:D.5, H2O.17, H2O.21
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
HEM.3: 20 residues within 4Å:- Chain A: L.3, E.4, M.7, L.10, N.11, L.14, M.33, P.45, P.46, F.61, G.64, F.65, L.68, L.94, C.98, C.101, H.102, Y.105, R.106
- Ligands: CA.2
15 PLIP interactions:15 interactions with chain A,- Hydrophobic interactions: A:E.4, A:M.7, A:L.10, A:L.10, A:N.11, A:P.45, A:F.65, A:F.65, A:F.65, A:L.68, A:L.94, A:R.106
- Water bridges: A:E.4
- pi-Stacking: A:H.102
- Metal complexes: A:H.102
HEM.8: 19 residues within 4Å:- Chain B: L.3, E.4, M.7, L.10, N.11, L.14, M.33, P.45, P.46, F.61, G.64, F.65, L.68, L.94, C.98, C.101, H.102, Y.105, R.106
13 PLIP interactions:13 interactions with chain B,- Hydrophobic interactions: B:L.3, B:M.7, B:L.14, B:P.45, B:F.61, B:F.65, B:F.65, B:F.65, B:L.68, B:L.94, B:R.106
- Water bridges: B:R.106
- Metal complexes: B:H.102
HEM.10: 18 residues within 4Å:- Chain C: L.3, E.4, M.7, L.10, N.11, L.14, M.33, P.45, P.46, F.61, F.65, L.68, L.94, C.98, C.101, H.102, Y.105, R.106
15 PLIP interactions:15 interactions with chain C,- Hydrophobic interactions: C:M.7, C:L.10, C:L.10, C:N.11, C:L.14, C:P.45, C:F.65, C:L.68, C:L.94, C:R.106
- Hydrogen bonds: C:E.4
- pi-Stacking: C:H.102, C:H.102
- pi-Cation interactions: C:R.106
- Metal complexes: C:H.102
HEM.13: 15 residues within 4Å:- Chain D: L.3, M.7, E.8, N.11, P.45, P.46, F.61, F.65, L.68, L.94, C.98, C.101, H.102, Y.105, R.106
14 PLIP interactions:14 interactions with chain D,- Hydrophobic interactions: D:M.7, D:N.11, D:P.45, D:F.61, D:F.61, D:F.65, D:L.68, D:L.68, D:L.94, D:R.106, D:R.106
- Salt bridges: D:R.106
- pi-Stacking: D:H.102
- Metal complexes: D:H.102
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Salgado, E.N. et al., Metal-mediated self-assembly of protein superstructures: influence of secondary interactions on protein oligomerization and aggregation. J.Am.Chem.Soc. (2008)
- Release Date
- 2008-05-06
- Peptides
- Soluble cytochrome b562: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 5 x CA: CALCIUM ION(Non-covalent)
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Salgado, E.N. et al., Metal-mediated self-assembly of protein superstructures: influence of secondary interactions on protein oligomerization and aggregation. J.Am.Chem.Soc. (2008)
- Release Date
- 2008-05-06
- Peptides
- Soluble cytochrome b562: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D