SMTL ID : 3c74.1

X-ray structure of the uridine phosphorylase from salmonella typhimurium in complex with 2,2'-anhydrouridine at 2.38a resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

homo-hexamer

Ligands

6 x ANU: 2,2'-Anhydro-(1-beta-D-arabinofuranosyl)uracil(Non-covalent)

ANU.1: 12 residues within 4Å: Chain A: I.69, T.94, G.96, F.162, Q.166, R.168, Y.195, E.196, M.197, E.198 Chain F: H.8, R.48 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain F Hydrogen bonds: A:G.96, A:Q.166, A:R.168, A:R.168, A:E.198, F:H.8, F:R.48 ANU.2: 13 residues within 4Å: Chain B: I.69, T.94, G.96, F.162, Q.166, R.168, Y.195, E.196, M.197, E.198 Chain D: F.7, H.8, R.48 10 PLIP interactions: 8 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:F.162 Hydrogen bonds: B:T.94, B:G.96, B:Q.166, B:R.168, B:E.198, D:H.8, D:R.48 Water bridges: B:R.91, B:T.94 ANU.3: 9 residues within 4Å: Chain C: T.94, F.162, Q.166, R.168, Y.195, E.196, M.197, E.198 Chain E: H.8 9 PLIP interactions: 8 interactions with chain C, 1 interactions with chain E Hydrophobic interactions: C:F.162 Hydrogen bonds: C:T.94, C:G.96, C:Q.166, C:R.168, C:E.198, E:H.8 Water bridges: C:R.91, C:T.94 ANU.4: 12 residues within 4Å: Chain B: F.7, H.8, R.48 Chain D: I.69, T.94, G.96, F.162, Q.166, Y.195, E.196, M.197, E.198 11 PLIP interactions: 9 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: D:F.162 Hydrogen bonds: D:G.96, D:Q.166, D:R.168, D:R.168, D:E.198, B:H.8, B:R.48 Water bridges: D:R.91, D:E.198, D:E.198 ANU.5: 12 residues within 4Å: Chain C: H.8 Chain E: I.69, T.94, G.96, F.162, Q.166, R.168, Y.195, E.196, M.197, E.198, I.220 10 PLIP interactions: 1 interactions with chain C, 9 interactions with chain E Hydrogen bonds: C:H.8, E:T.94, E:Q.166, E:R.168, E:E.198 Hydrophobic interactions: E:F.162, E:I.220 Water bridges: E:R.91, E:R.91, E:T.94 ANU.6: 13 residues within 4Å: Chain A: H.8, R.48 Chain F: I.69, T.94, G.96, F.162, Q.166, R.168, Y.195, E.196, M.197, E.198, I.220 10 PLIP interactions: 8 interactions with chain F, 2 interactions with chain A Hydrophobic interactions: F:F.162, F:I.220 Hydrogen bonds: F:Q.166, F:R.168, F:R.168, F:E.198, A:H.8 Water bridges: F:R.91, F:T.94, A:R.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lashkov, A.A. et al., X-ray structure of the uridine phosphorylase from salmonella typhimurium in complex with 2,2'-anhydrouridine at 2.38a resolution. To be Published

Release Date

2009-02-10

Peptides

Uridine phosphorylase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Uridine phosphorylase