SMTL ID : 3c7e.1

Crystal structure of a glycoside hydrolase family 43 arabinoxylan arabinofuranohydrolase from Bacillus subtilis.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.359, E.361, N.383, Q.384, D.480 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.359, A:E.361, A:Q.384, A:D.480, A:D.480

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: R.368, S.388, Q.390, D.393 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.388, A:Q.390 NA.3: 3 residues within 4Å: Chain A: P.103, P.164, H.290 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.103

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 4 residues within 4Å: Chain A: I.218, D.219, P.268, F.269 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.219, A:F.269 FMT.5: 5 residues within 4Å: Chain A: T.29, N.31, G.32, F.296, K.297 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.32, A:R.33, A:K.297 Water bridges: A:N.298 FMT.6: 3 residues within 4Å: Chain A: N.342, Y.343, A.344 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.343, A:A.344 FMT.7: 4 residues within 4Å: Chain A: D.24, L.59, W.101, R.321 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.321, A:R.321

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vandermarliere, E. et al., Structural analysis of a glycoside hydrolase family 43 arabinoxylan arabinofuranohydrolase in complex with xylotetraose reveals a different binding mechanism compared with other members of the same family. Biochem.J. (2009)

Release Date

2008-11-18

Peptides

Endo-1,4-beta-xylanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endo-1,4-beta-xylanase

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