SMTL ID : 3c86.1 (1 other biounit)

OpdA from agrobacterium radiobacter with bound product diethyl thiophosphate from crystal soaking with tetraethyl dithiopyrophosphate- 1.8 A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 6 residues within 4Å: Chain A: H.22, H.24, K.136, D.268 Ligands: CO.2, DPJ.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.22, A:H.24, A:D.268, H2O.11

1 x CO: COBALT (II) ION(Non-covalent)

CO.2: 6 residues within 4Å: Chain A: K.136, H.168, H.197, R.221 Ligands: FE2.1, DPJ.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.168, A:H.197, H2O.11

1 x DPJ: O,O-DIETHYL HYDROGEN THIOPHOSPHATE(Non-covalent)

DPJ.3: 14 residues within 4Å: Chain A: H.24, G.27, W.98, K.136, H.168, R.221, Y.224, L.238, D.268, L.270, F.273 Ligands: FE2.1, CO.2, EDO.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.238, A:L.270, A:F.273 Hydrogen bonds: A:R.221

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: W.98, L.238, S.275, Y.276 Ligands: DPJ.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jackson, C.J. et al., In crystallo capture of a Michaelis complex and product-binding modes of a bacterial phosphotriesterase. J.Mol.Biol. (2008)

Release Date

2008-02-19

Peptides

Phosphotriesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphotriesterase

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