SMTL ID : 3c8f.1

4Fe-4S-Pyruvate formate-lyase Activating Enzyme with partially disordered AdoMet

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 12 residues within 4Å: Chain A: C.29, M.31, R.32, C.33, C.36, T.41, W.42, G.77, G.78, N.106, K.131 Ligands: MT2.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:C.29, A:C.33, A:C.36, MT2.2

1 x MT2: [(3S)-3-amino-3-carboxypropyl](ethyl)methylsulfonium(Non-covalent)

MT2.2: 9 residues within 4Å: Chain A: H.37, G.77, G.78, D.104, N.106, D.129, K.131, R.166 Ligands: SF4.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.106, A:N.106, A:D.129, A:K.131 Salt bridges: A:D.104, A:D.129

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 9 residues within 4Å: Chain A: T.14, R.21, S.69, G.70, T.74, H.100, L.125, M.127, W.164 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vey, J.L. et al., Structural basis for glycyl radical formation by pyruvate formate-lyase activating enzyme. Proc.Natl.Acad.Sci.Usa (2008)

Release Date

2008-10-28

Peptides

Pyruvate formate-lyase 1-activating enzyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pyruvate formate-lyase 1-activating enzyme

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