SMTL ID : 3c9m.1

Structure of a mutant bovine rhodopsin in hexagonal crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: T.4, N.15, G.18, V.20, R.21 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.21

1 x ACE: ACETYL GROUP(Non-functional Binders)

ACE.2: 3 residues within 4Å: Chain A: M.1, C.2, K.16 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.16

1 x RET: RETINAL(Covalent)

RET.3: 17 residues within 4Å: Chain A: E.113, A.117, T.118, G.121, E.122, E.181, C.187, G.188, I.189, Y.191, M.207, F.212, W.265, Y.268, A.269, A.292, K.296 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.117, A:I.189, A:F.212, A:W.265, A:W.265, A:Y.268, A:Y.268, A:A.269, A:K.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stenkamp, R.E., Alternative models for two crystal structures of bovine rhodopsin. Acta Crystallogr.,Sect.D (2008)

Release Date

2008-08-05

Peptides

Rhodopsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Rhodopsin