SMTL ID : 3c9s.1

AaThiL complexed with AMPPCP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: T.78, D.79 Chain B: N.155 Ligands: MG.3, ACP.8 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.78, A:D.79, H2O.6, H2O.6 MG.2: 6 residues within 4Å: Chain A: D.63, D.107, R.178, D.243 Ligands: MG.3, ACP.8 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.63, A:D.107, A:D.243, H2O.4 MG.3: 5 residues within 4Å: Chain A: D.79, D.107 Ligands: MG.1, MG.2, ACP.8 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.79, A:D.79, A:D.107, A:D.107, H2O.3 MG.5: 6 residues within 4Å: Chain B: D.63, D.107, R.178, D.243 Ligands: ACP.4, MG.7 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.63, B:D.107, B:D.243, H2O.6 MG.6: 5 residues within 4Å: Chain A: N.155 Chain B: T.78, D.79 Ligands: ACP.4, MG.7 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:T.78, B:D.79, H2O.3, H2O.4 MG.7: 5 residues within 4Å: Chain B: D.79, D.107 Ligands: ACP.4, MG.5, MG.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.79, B:D.79, B:D.107, B:D.107, H2O.6

2 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.4: 23 residues within 4Å: Chain A: I.120, L.122, Y.137, G.153, G.154, N.155, I.156 Chain B: E.44, I.48, I.51, I.60, G.61, D.62, D.63, D.79, D.107, R.178, D.243, S.245, D.246 Ligands: MG.5, MG.6, MG.7 18 PLIP interactions: 12 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:G.61, B:D.62, B:D.63, B:D.107, B:R.178, B:S.245, B:S.245, A:Y.137, A:Y.137, A:G.154, A:N.155 Water bridges: B:D.62, B:T.78, B:R.178, B:D.246, B:D.246, A:G.154, A:I.156 ACP.8: 22 residues within 4Å: Chain A: I.48, I.51, I.60, G.61, D.62, D.63, D.79, D.107, R.178, D.243, S.245, D.246 Chain B: I.120, L.122, Y.137, G.153, G.154, N.155, I.156 Ligands: MG.1, MG.2, MG.3 14 PLIP interactions: 6 interactions with chain B, 8 interactions with chain A Hydrogen bonds: B:Y.137, B:G.154, B:N.155, A:G.61, A:D.62, A:D.107, A:R.178, A:S.245, A:S.245, A:S.245 Water bridges: B:G.154, B:N.155, B:I.156, A:D.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McCulloch, K.M. et al., Structural studies of thiamin monophosphate kinase in complex with substrates and products. Biochemistry (2008)

Release Date

2008-03-18

Peptides

Thiamine monophosphate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thiamine monophosphate kinase

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