- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- monomer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 7 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.5: 4 residues within 4Å:- Chain A: P.49, D.52, A.53, G.181
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.49, A:G.181
MPD.6: 9 residues within 4Å:- Chain A: A.46, V.47, F.77, S.80, A.81, Q.84, W.203, P.204, R.207
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.47, A:W.203
MPD.7: 4 residues within 4Å:- Chain A: R.131, I.134, N.138, M.166
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:M.166
- Hydrogen bonds: A:R.131
MPD.8: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MPD.9: 4 residues within 4Å:- Chain A: H.87, Y.88, F.109, W.110
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:H.87, A:Y.88, A:F.109, A:W.110
MPD.10: 8 residues within 4Å:- Chain A: L.137, N.138, V.144, H.145, A.147, T.167, R.175, W.176
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.137, A:V.144, A:A.147, A:T.167, A:W.176
- Hydrogen bonds: A:R.175
MPD.11: 2 residues within 4Å:- Chain A: F.132, A.135
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.132, A:A.135
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Chao, K.L. et al., The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an alpha/beta-fold characteristic of nucleotide-utilizing enzymes. Proteins (2008)
- Release Date
- 2008-05-06
- Peptides
- Protein ydcF: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- monomer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 7 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Chao, K.L. et al., The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an alpha/beta-fold characteristic of nucleotide-utilizing enzymes. Proteins (2008)
- Release Date
- 2008-05-06
- Peptides
- Protein ydcF: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A