SMTL ID : 3ca9.1 (1 other biounit)

Evolution of chlorella virus dUTPase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-trimer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.89 Chain B: D.89 Chain C: D.89 Ligands: MG.3, MG.5 No protein-ligand interaction detected (PLIP) MG.3: 5 residues within 4Å: Chain A: D.89 Chain B: D.89 Chain C: D.89 Ligands: MG.1, MG.5 No protein-ligand interaction detected (PLIP) MG.5: 5 residues within 4Å: Chain A: D.89 Chain B: D.89 Chain C: D.89 Ligands: MG.1, MG.3 No protein-ligand interaction detected (PLIP)

3 x DUD: DEOXYURIDINE-5'-DIPHOSPHATE(Non-covalent)

DUD.2: 12 residues within 4Å: Chain A: A.92, G.93, V.94, I.95, D.96, Y.99, E.102, V.103, K.104 Chain C: R.79, S.80, G.81 13 PLIP interactions: 8 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:A.92, A:I.95, A:Y.99 Hydrogen bonds: A:G.93, A:D.96, A:Y.99, A:K.104, A:K.104, C:S.80, C:S.80, C:G.81 Water bridges: C:Q.125 Salt bridges: C:R.79 DUD.4: 12 residues within 4Å: Chain A: R.79, S.80, G.81 Chain B: A.92, G.93, V.94, I.95, D.96, Y.99, E.102, V.103, K.104 13 PLIP interactions: 8 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:A.92, B:I.95, B:Y.99 Hydrogen bonds: B:G.93, B:D.96, B:D.96, B:K.104, B:K.104, A:S.80, A:S.80, A:G.81 Water bridges: A:Q.125 Salt bridges: A:R.79 DUD.6: 12 residues within 4Å: Chain B: R.79, S.80, G.81 Chain C: A.92, G.93, V.94, I.95, D.96, Y.99, E.102, V.103, K.104 14 PLIP interactions: 9 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:A.92, C:I.95, C:Y.99 Hydrogen bonds: C:G.93, C:D.96, C:D.96, C:Y.99, C:K.104, C:K.104, B:S.80, B:S.80, B:G.81 Water bridges: B:Q.125 Salt bridges: B:R.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Homma, K. et al., Crystallization and crystal-packing studies of Chlorella virus deoxyuridine triphosphatase. Acta Crystallogr.,Sect.F (2009)

Release Date

2009-03-03

Peptides

Deoxyuridine triphosphatase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Deoxyuridine triphosphatase

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