- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 16 x ZN: ZINC ION(Non-covalent)
- 16 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
HEM.5: 17 residues within 4Å:- Chain A: X.1, M.4, P.8, F.22, H.24, H.27, N.28, I.33, S.35, C.36, C.39, H.40, V.55, P.58, C.59, Y.78
- Ligands: HEM.7
12 PLIP interactions:12 interactions with chain A,- Hydrophobic interactions: A:P.8, A:F.22, A:I.33, A:I.33, A:V.55, A:V.55, A:Y.78
- Hydrogen bonds: A:C.59, A:Y.78, A:Y.78
- Metal complexes: A:H.24, A:H.40
HEM.6: 17 residues within 4Å:- Chain A: C.39, H.41, W.43, G.46, S.54, T.57, P.58, C.59, C.62, H.63, D.70, T.71, P.72, A.77, Y.78, Q.80, Q.81
17 PLIP interactions:17 interactions with chain A,- Hydrophobic interactions: A:W.43, A:W.43, A:W.43, A:T.57, A:T.71, A:P.72, A:A.77, A:Y.78, A:Q.80, A:Q.81
- Water bridges: A:Q.81, A:Q.81, A:Q.81
- Salt bridges: A:H.41
- pi-Cation interactions: A:H.41
- Metal complexes: A:H.41, A:H.63
HEM.7: 15 residues within 4Å:- Chain A: V.21, F.22, H.27, A.31, I.33, C.39, Q.81, C.82, C.85, H.86, Q.89, K.91, G.92, P.93
- Ligands: HEM.5
9 PLIP interactions:9 interactions with chain A,- Hydrophobic interactions: A:F.22, A:A.31, A:I.33, A:K.91, A:P.93
- Salt bridges: A:K.30
- pi-Stacking: A:H.86
- Metal complexes: A:H.27, A:H.86
HEM.8: 19 residues within 4Å:- Chain A: V.7, P.8, T.9, F.12, L.15, E.16, R.17, A.19, A.20, Q.75, Y.78, H.79, C.82, W.83, H.86, M.95, C.96, C.99, H.100
21 PLIP interactions:21 interactions with chain A,- Hydrophobic interactions: A:V.7, A:V.7, A:F.12, A:F.12, A:L.15, A:R.17, A:A.20, A:Q.75, A:Y.78, A:Y.78, A:W.83, A:W.83, A:W.83
- Hydrogen bonds: A:E.16, A:R.17, A:R.17, A:A.20
- Salt bridges: A:H.100
- pi-Stacking: A:H.100
- Metal complexes: A:H.79, A:H.100
HEM.16: 17 residues within 4Å:- Chain B: X.1, M.4, P.8, F.22, H.24, H.27, N.28, I.33, S.35, C.36, C.39, H.40, V.55, P.58, C.59, Y.78
- Ligands: HEM.18
12 PLIP interactions:12 interactions with chain B,- Hydrophobic interactions: B:P.8, B:F.22, B:I.33, B:I.33, B:V.55, B:V.55, B:Y.78
- Hydrogen bonds: B:C.59, B:Y.78, B:Y.78
- Metal complexes: B:H.24, B:H.40
HEM.17: 17 residues within 4Å:- Chain B: C.39, H.41, W.43, G.46, S.54, T.57, P.58, C.59, C.62, H.63, D.70, T.71, P.72, A.77, Y.78, Q.80, Q.81
17 PLIP interactions:17 interactions with chain B,- Hydrophobic interactions: B:W.43, B:W.43, B:W.43, B:T.57, B:T.71, B:P.72, B:A.77, B:Y.78, B:Q.80, B:Q.81
- Water bridges: B:Q.81, B:Q.81, B:Q.81
- Salt bridges: B:H.41
- pi-Cation interactions: B:H.41
- Metal complexes: B:H.41, B:H.63
HEM.18: 15 residues within 4Å:- Chain B: V.21, F.22, H.27, A.31, I.33, C.39, Q.81, C.82, C.85, H.86, Q.89, K.91, G.92, P.93
- Ligands: HEM.16
9 PLIP interactions:9 interactions with chain B,- Hydrophobic interactions: B:F.22, B:A.31, B:I.33, B:K.91, B:P.93
- Salt bridges: B:K.30
- pi-Stacking: B:H.86
- Metal complexes: B:H.27, B:H.86
HEM.19: 19 residues within 4Å:- Chain B: V.7, P.8, T.9, F.12, L.15, E.16, R.17, A.19, A.20, Q.75, Y.78, H.79, C.82, W.83, H.86, M.95, C.96, C.99, H.100
21 PLIP interactions:21 interactions with chain B,- Hydrophobic interactions: B:V.7, B:V.7, B:F.12, B:F.12, B:L.15, B:R.17, B:A.20, B:Q.75, B:Y.78, B:Y.78, B:W.83, B:W.83, B:W.83
- Hydrogen bonds: B:E.16, B:R.17, B:R.17, B:A.20
- Salt bridges: B:H.100
- pi-Stacking: B:H.100
- Metal complexes: B:H.79, B:H.100
HEM.27: 17 residues within 4Å:- Chain C: X.1, M.4, P.8, F.22, H.24, H.27, N.28, I.33, S.35, C.36, C.39, H.40, V.55, P.58, C.59, Y.78
- Ligands: HEM.29
12 PLIP interactions:12 interactions with chain C,- Hydrophobic interactions: C:P.8, C:F.22, C:I.33, C:I.33, C:V.55, C:V.55, C:Y.78
- Hydrogen bonds: C:C.59, C:Y.78, C:Y.78
- Metal complexes: C:H.24, C:H.40
HEM.28: 17 residues within 4Å:- Chain C: C.39, H.41, W.43, G.46, S.54, T.57, P.58, C.59, C.62, H.63, D.70, T.71, P.72, A.77, Y.78, Q.80, Q.81
17 PLIP interactions:17 interactions with chain C,- Hydrophobic interactions: C:W.43, C:W.43, C:W.43, C:T.57, C:T.71, C:P.72, C:A.77, C:Y.78, C:Q.80, C:Q.81
- Water bridges: C:Q.81, C:Q.81, C:Q.81
- Salt bridges: C:H.41
- pi-Cation interactions: C:H.41
- Metal complexes: C:H.41, C:H.63
HEM.29: 15 residues within 4Å:- Chain C: V.21, F.22, H.27, A.31, I.33, C.39, Q.81, C.82, C.85, H.86, Q.89, K.91, G.92, P.93
- Ligands: HEM.27
9 PLIP interactions:9 interactions with chain C,- Hydrophobic interactions: C:F.22, C:A.31, C:I.33, C:K.91, C:P.93
- Salt bridges: C:K.30
- pi-Stacking: C:H.86
- Metal complexes: C:H.27, C:H.86
HEM.30: 19 residues within 4Å:- Chain C: V.7, P.8, T.9, F.12, L.15, E.16, R.17, A.19, A.20, Q.75, Y.78, H.79, C.82, W.83, H.86, M.95, C.96, C.99, H.100
23 PLIP interactions:23 interactions with chain C,- Hydrophobic interactions: C:V.7, C:V.7, C:F.12, C:F.12, C:L.15, C:R.17, C:A.20, C:Q.75, C:Y.78, C:Y.78, C:W.83, C:W.83, C:W.83
- Hydrogen bonds: C:E.16, C:R.17, C:R.17, C:A.20
- Water bridges: C:H.100, C:H.100
- Salt bridges: C:H.100
- pi-Stacking: C:H.100
- Metal complexes: C:H.79, C:H.100
HEM.38: 17 residues within 4Å:- Chain D: X.1, M.4, P.8, F.22, H.24, H.27, N.28, I.33, S.35, C.36, C.39, H.40, V.55, P.58, C.59, Y.78
- Ligands: HEM.40
12 PLIP interactions:12 interactions with chain D,- Hydrophobic interactions: D:P.8, D:F.22, D:I.33, D:I.33, D:V.55, D:V.55, D:Y.78
- Hydrogen bonds: D:C.59, D:Y.78, D:Y.78
- Metal complexes: D:H.24, D:H.40
HEM.39: 17 residues within 4Å:- Chain D: C.39, H.41, W.43, G.46, S.54, T.57, P.58, C.59, C.62, H.63, D.70, T.71, P.72, A.77, Y.78, Q.80, Q.81
17 PLIP interactions:17 interactions with chain D,- Hydrophobic interactions: D:W.43, D:W.43, D:W.43, D:T.57, D:T.71, D:P.72, D:A.77, D:Y.78, D:Q.80, D:Q.81
- Water bridges: D:Q.81, D:Q.81, D:Q.81
- Salt bridges: D:H.41
- pi-Cation interactions: D:H.41
- Metal complexes: D:H.41, D:H.63
HEM.40: 15 residues within 4Å:- Chain D: V.21, F.22, H.27, A.31, I.33, C.39, Q.81, C.82, C.85, H.86, Q.89, K.91, G.92, P.93
- Ligands: HEM.38
9 PLIP interactions:9 interactions with chain D,- Hydrophobic interactions: D:F.22, D:A.31, D:I.33, D:K.91, D:P.93
- Salt bridges: D:K.30
- pi-Stacking: D:H.86
- Metal complexes: D:H.27, D:H.86
HEM.41: 19 residues within 4Å:- Chain D: V.7, P.8, T.9, F.12, L.15, E.16, R.17, A.19, A.20, Q.75, Y.78, H.79, C.82, W.83, H.86, M.95, C.96, C.99, H.100
23 PLIP interactions:23 interactions with chain D,- Hydrophobic interactions: D:V.7, D:V.7, D:F.12, D:F.12, D:L.15, D:R.17, D:A.20, D:Q.75, D:Y.78, D:Y.78, D:W.83, D:W.83, D:W.83
- Hydrogen bonds: D:E.16, D:R.17, D:R.17, D:A.20
- Water bridges: D:H.100, D:H.100
- Salt bridges: D:H.100
- pi-Stacking: D:H.100
- Metal complexes: D:H.79, D:H.100
- 12 x ARS: ARSENIC(Non-covalent)
ARS.9: 6 residues within 4Å:- Chain A: E.26, E.29
- Chain D: E.26
- Ligands: ZN.4, ZN.37, ARS.42
No protein-ligand interaction detected (PLIP)ARS.10: 2 residues within 4Å:- Chain A: E.87
- Ligands: ZN.3
No protein-ligand interaction detected (PLIP)ARS.11: 5 residues within 4Å:- Chain A: E.87
- Chain B: E.87
- Ligands: ZN.3, ZN.14, ARS.22
No protein-ligand interaction detected (PLIP)ARS.20: 6 residues within 4Å:- Chain B: E.26, E.29
- Chain C: E.26
- Ligands: ZN.15, ZN.26, ARS.31
No protein-ligand interaction detected (PLIP)ARS.21: 2 residues within 4Å:- Chain B: E.87
- Ligands: ZN.14
No protein-ligand interaction detected (PLIP)ARS.22: 5 residues within 4Å:- Chain A: E.87
- Chain B: E.87
- Ligands: ZN.3, ARS.11, ZN.14
No protein-ligand interaction detected (PLIP)ARS.31: 6 residues within 4Å:- Chain B: E.26
- Chain C: E.26, E.29
- Ligands: ZN.15, ARS.20, ZN.26
No protein-ligand interaction detected (PLIP)ARS.32: 2 residues within 4Å:- Chain C: E.87
- Ligands: ZN.25
No protein-ligand interaction detected (PLIP)ARS.33: 5 residues within 4Å:- Chain C: E.87
- Chain D: E.87
- Ligands: ZN.25, ZN.36, ARS.44
No protein-ligand interaction detected (PLIP)ARS.42: 6 residues within 4Å:- Chain A: E.26
- Chain D: E.26, E.29
- Ligands: ZN.4, ARS.9, ZN.37
No protein-ligand interaction detected (PLIP)ARS.43: 2 residues within 4Å:- Chain D: E.87
- Ligands: ZN.36
No protein-ligand interaction detected (PLIP)ARS.44: 5 residues within 4Å:- Chain C: E.87
- Chain D: E.87
- Ligands: ZN.25, ARS.33, ZN.36
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Norager, S. et al., Crystal structure of the oxidised and reduced acidic cytochrome c3from Desulfovibrio africanus. J.Mol.Biol. (1999)
- Release Date
- 2000-07-23
- Peptides
- CYTOCHROME C3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 16 x ZN: ZINC ION(Non-covalent)
- 16 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 12 x ARS: ARSENIC(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Norager, S. et al., Crystal structure of the oxidised and reduced acidic cytochrome c3from Desulfovibrio africanus. J.Mol.Biol. (1999)
- Release Date
- 2000-07-23
- Peptides
- CYTOCHROME C3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A