SMTL ID : 3cdz.1

Crystal structure of human factor VIII

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.98 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.239, R.240, H.317 No protein-ligand interaction detected (PLIP)

1 x NAG- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-MAN-MAN-MAN.2: 5 residues within 4Å: Chain B: Q.222, T.224, Q.290, R.291 Ligands: NAG.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.224, B:T.224

2 x CU: COPPER (II) ION(Non-covalent)

CU.3: 4 residues within 4Å: Chain A: H.232, H.267, C.310, H.315 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.267, A:C.310 CU.7: 5 residues within 4Å: Chain B: I.305, H.306, C.352, I.354, H.357 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.306, B:C.352, B:H.357

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 8 residues within 4Å: Chain A: K.107, S.109, E.110, D.116, T.118, E.122, D.125, D.126 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:K.107, A:E.122, A:D.125, A:D.126, A:D.126

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain B: A.131, N.162 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.131 NAG.6: 5 residues within 4Å: Chain B: Q.222, Q.290, N.470, N.493 Ligands: NAG-MAN-MAN-MAN.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.493

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ngo, J.C. et al., Crystal structure of human factor VIII: implications for the formation of the factor IXa-factor VIIIa complex. Structure (2008)

Release Date

2008-04-01

Peptides

Coagulation factor VIII heavy chain: A
Coagulation factor VIII light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor VIII heavy chain

Coagulation factor VIII light chain

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