SMTL ID : 3ce1.1

Crystal Structure of the Cu/Zn Superoxide Dismutase from Cryptococcus liquefaciens Strain N6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.67, H.75, H.84, D.87, K.140 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.67, A:H.75, A:H.84, A:D.87, A:D.87 ZN.4: 5 residues within 4Å: Chain B: H.67, H.75, H.84, D.87, K.140 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.67, B:H.75, B:H.84, B:D.87, B:D.87

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 2 residues within 4Å: Chain A: T.79, A.80 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.79, A:T.79 ACT.5: 2 residues within 4Å: Chain B: T.79, A.80 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.79 Water bridges: B:D.77

2 x CU: COPPER (II) ION(Non-covalent)

CU.3: 4 residues within 4Å: Chain A: H.50, H.52, H.67, H.124 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.50, A:H.52, A:H.67, A:H.124, H2O.1 CU.6: 4 residues within 4Å: Chain B: H.50, H.52, H.67, H.124 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.50, B:H.52, B:H.67, B:H.124, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teh, A.H. et al., Structure of Cu/Zn superoxide dismutase from the heavy-metal-tolerant yeast Cryptococcus liquefaciens strain N6. Biochem.Biophys.Res.Commun. (2008)

Release Date

2008-08-26

Peptides

Superoxide dismutase [Cu-Zn]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Superoxide dismutase [Cu-Zn]