SMTL ID : 3ce8.1

Crystal structure of a duf3240 family protein (sbal_0098) from shewanella baltica os155 at 2.40 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-trimer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 11 residues within 4Å: Chain A: K.80, E.82 Chain B: K.80, E.82 Chain C: K.80, E.82 Ligands: PO4.2, PO4.5, PO4.6, PO4.9, PO4.10 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Salt bridges: B:K.80, C:K.80, A:K.80 PO4.2: 11 residues within 4Å: Chain A: I.56, K.80 Chain B: K.80 Chain C: I.56, K.80, E.82 Ligands: PO4.1, PO4.5, PO4.6, PO4.9, PO4.10 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Salt bridges: B:K.80, C:K.80, A:K.80 PO4.5: 11 residues within 4Å: Chain A: K.80, E.82 Chain B: K.80, E.82 Chain C: K.80, E.82 Ligands: PO4.1, PO4.2, PO4.6, PO4.9, PO4.10 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Salt bridges: B:K.80, C:K.80, A:K.80 PO4.6: 11 residues within 4Å: Chain A: I.56, K.80, E.82 Chain B: I.56, K.80 Chain C: K.80 Ligands: PO4.1, PO4.2, PO4.5, PO4.9, PO4.10 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Salt bridges: B:K.80, C:K.80, A:K.80 PO4.9: 11 residues within 4Å: Chain A: K.80, E.82 Chain B: K.80, E.82 Chain C: K.80, E.82 Ligands: PO4.1, PO4.2, PO4.5, PO4.6, PO4.10 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Salt bridges: B:K.80, C:K.80, A:K.80 PO4.10: 11 residues within 4Å: Chain A: K.80 Chain B: I.56, K.80, E.82 Chain C: I.56, K.80 Ligands: PO4.1, PO4.2, PO4.5, PO4.6, PO4.9 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 interactions with chain A Salt bridges: B:K.80, C:K.80, A:K.80

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: T.41, E.44, L.45 No protein-ligand interaction detected (PLIP) EDO.4: 6 residues within 4Å: Chain A: G.50, F.51, S.52, E.82, M.84 Chain B: W.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.50, A:S.52 Water bridges: A:G.50 EDO.7: 3 residues within 4Å: Chain B: T.41, E.44, L.45 No protein-ligand interaction detected (PLIP) EDO.8: 6 residues within 4Å: Chain B: G.50, F.51, S.52, E.82, M.84 Chain C: W.109 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.50, B:S.52 Water bridges: B:G.50 EDO.11: 3 residues within 4Å: Chain C: T.41, E.44, L.45 No protein-ligand interaction detected (PLIP) EDO.12: 6 residues within 4Å: Chain A: W.109 Chain C: G.50, F.51, S.52, E.82, M.84 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.50, C:S.52 Water bridges: C:G.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of putative PII-like nitrogen regulatory protein (YP_001048502.1) from Shewanella baltica OS155 at 2.40 A resolution. To be published

Release Date

2008-03-11

Peptides

Putative PII-like nitrogen regulatory protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Putative PII-like nitrogen regulatory protein