SMTL ID : 3cf0.1 (1 other biounit)

Structure of D2 subdomain of P97/VCP in complex with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-heptamer

Ligands

7 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: D.16, I.17, G.18, L.20, P.58, G.59, C.60, G.61, K.62, T.63, L.64, I.194, N.198, G.222, A.223, T.226 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.18, A:G.59, A:C.60, A:C.60, A:G.61, A:K.62, A:T.63, A:T.63, A:L.64, A:T.226 Salt bridges: A:K.62 ADP.2: 16 residues within 4Å: Chain B: D.16, I.17, G.18, L.20, P.58, G.59, C.60, G.61, K.62, T.63, L.64, I.194, N.198, G.222, A.223, T.226 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:G.18, B:G.59, B:C.60, B:C.60, B:G.61, B:K.62, B:T.63, B:T.63, B:T.63, B:L.64, B:T.226 Salt bridges: B:K.62 ADP.3: 16 residues within 4Å: Chain C: D.16, I.17, G.18, L.20, P.58, G.59, C.60, G.61, K.62, T.63, L.64, I.194, N.198, G.222, A.223, T.226 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:G.18, C:G.59, C:C.60, C:C.60, C:G.61, C:K.62, C:T.63, C:T.63, C:T.63, C:L.64, C:T.226 Salt bridges: C:K.62 ADP.4: 16 residues within 4Å: Chain D: D.16, I.17, G.18, L.20, P.58, G.59, C.60, G.61, K.62, T.63, L.64, I.194, N.198, G.222, A.223, T.226 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:G.18, D:G.59, D:C.60, D:C.60, D:G.61, D:K.62, D:T.63, D:T.63, D:L.64, D:T.226 Salt bridges: D:K.62 ADP.5: 16 residues within 4Å: Chain E: D.16, I.17, G.18, L.20, P.58, G.59, C.60, G.61, K.62, T.63, L.64, I.194, N.198, G.222, A.223, T.226 11 PLIP interactions: 11 interactions with chain E Hydrogen bonds: E:G.18, E:G.59, E:C.60, E:C.60, E:G.61, E:K.62, E:T.63, E:T.63, E:L.64, E:T.226 Salt bridges: E:K.62 ADP.6: 16 residues within 4Å: Chain F: D.16, I.17, G.18, L.20, P.58, G.59, C.60, G.61, K.62, T.63, L.64, I.194, N.198, G.222, A.223, T.226 11 PLIP interactions: 11 interactions with chain F Hydrogen bonds: F:G.18, F:G.59, F:C.60, F:C.60, F:G.61, F:K.62, F:T.63, F:T.63, F:L.64, F:T.226 Salt bridges: F:K.62 ADP.7: 16 residues within 4Å: Chain G: D.16, I.17, G.18, L.20, P.58, G.59, C.60, G.61, K.62, T.63, L.64, I.194, N.198, G.222, A.223, T.226 11 PLIP interactions: 11 interactions with chain G Hydrogen bonds: G:G.18, G:G.59, G:C.60, G:C.60, G:G.61, G:K.62, G:T.63, G:T.63, G:L.64, G:T.226 Salt bridges: G:K.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davies, J.M. et al., Improved Structures of Full-Length p97, an AAA ATPase: Implications for Mechanisms of Nucleotide-Dependent Conformational Change. Structure (2008)

Release Date

2008-04-22

Peptides

Transitional endoplasmic reticulum ATPase: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
G

E
H

F
M

G
N

Transitional endoplasmic reticulum ATPase

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