- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 8 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x FE: FE (III) ION(Non-covalent)
FE.3: 5 residues within 4Å:- Chain A: H.250, C.278, C.587, K.637
- Ligands: WCC.4
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.250, A:C.278, A:C.587, H2O.1
FE.25: 5 residues within 4Å:- Chain C: H.250, C.278, C.587, K.637
- Ligands: WCC.26
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:H.250, C:C.278, C:C.587, H2O.21
- 2 x WCC: FE(3)-NI(1)-S(4) CLUSTER(Non-covalent)
WCC.4: 14 residues within 4Å:- Chain A: H.250, C.277, C.278, C.323, G.522, C.523, P.524, C.552, C.587, F.634, S.635, K.637
- Ligands: FE.3, CMO.5
6 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: A:C.323, A:C.523, A:C.552, A:C.587, H2O.1, CMO.5
WCC.26: 14 residues within 4Å:- Chain C: H.250, C.277, C.278, C.323, G.522, C.523, P.524, C.552, C.587, F.634, S.635, K.637
- Ligands: FE.25, CMO.27
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions,- Metal complexes: C:C.323, C:C.523, C:C.552, C:C.587, H2O.21
- 2 x CMO: CARBON MONOXIDE(Non-functional Binders)
- 22 x ACY: ACETIC ACID(Non-functional Binders)
ACY.8: 6 residues within 4Å:- Chain A: D.327, P.330, E.331, K.334, R.459
- Chain C: R.91
Ligand excluded by PLIPACY.9: 3 residues within 4Å:- Chain A: T.406, D.407, K.477
Ligand excluded by PLIPACY.10: 2 residues within 4Å:- Chain A: R.571, F.572
Ligand excluded by PLIPACY.11: 6 residues within 4Å:- Chain A: P.707, M.708, K.711, W.730, H.734
- Chain B: Y.84
Ligand excluded by PLIPACY.12: 5 residues within 4Å:- Chain A: E.430, D.432
- Chain B: K.117, R.141
- Ligands: GOL.21
Ligand excluded by PLIPACY.13: 2 residues within 4Å:- Chain A: P.351, R.353
Ligand excluded by PLIPACY.14: 6 residues within 4Å:- Chain A: P.67, V.68, I.69, K.99
- Chain B: A.127, F.131
Ligand excluded by PLIPACY.15: 5 residues within 4Å:- Chain A: M.731, E.732, K.735, E.742, T.760
Ligand excluded by PLIPACY.16: 6 residues within 4Å:- Chain A: L.108, R.109, T.112, Q.636
- Chain C: Y.78, V.182
Ligand excluded by PLIPACY.17: 4 residues within 4Å:- Chain A: R.607, R.623, Q.796
- Ligands: GOL.18
Ligand excluded by PLIPACY.20: 4 residues within 4Å:- Chain A: T.669, E.744
- Chain B: Y.93, W.99
Ligand excluded by PLIPACY.30: 6 residues within 4Å:- Chain A: R.91
- Chain C: D.327, P.330, E.331, K.334, R.459
Ligand excluded by PLIPACY.31: 3 residues within 4Å:- Chain C: T.406, D.407, K.477
Ligand excluded by PLIPACY.32: 2 residues within 4Å:- Chain C: R.571, F.572
Ligand excluded by PLIPACY.33: 6 residues within 4Å:- Chain C: P.707, M.708, K.711, W.730, H.734
- Chain D: Y.84
Ligand excluded by PLIPACY.34: 5 residues within 4Å:- Chain C: E.430, D.432
- Chain D: K.117, R.141
- Ligands: GOL.43
Ligand excluded by PLIPACY.35: 2 residues within 4Å:- Chain C: P.351, R.353
Ligand excluded by PLIPACY.36: 6 residues within 4Å:- Chain C: P.67, V.68, I.69, K.99
- Chain D: A.127, F.131
Ligand excluded by PLIPACY.37: 5 residues within 4Å:- Chain C: M.731, E.732, K.735, E.742, T.760
Ligand excluded by PLIPACY.38: 6 residues within 4Å:- Chain A: Y.78, V.182
- Chain C: L.108, R.109, T.112, Q.636
Ligand excluded by PLIPACY.39: 4 residues within 4Å:- Chain C: R.607, R.623, Q.796
- Ligands: GOL.40
Ligand excluded by PLIPACY.42: 4 residues within 4Å:- Chain C: T.669, E.744
- Chain D: Y.93, W.99
Ligand excluded by PLIP- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.18: 7 residues within 4Å:- Chain A: R.607, D.618, Y.619, R.623, Q.796, P.797
- Ligands: ACY.17
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.607, A:R.607, A:R.623, A:R.623, A:Q.796
- Water bridges: A:D.618
GOL.19: 10 residues within 4Å:- Chain A: M.259, L.283, Y.286, K.287, E.288, R.292, P.293, P.294, Y.295, A.296
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.287, A:E.288, A:P.293, A:Y.295, A:A.296, A:A.296
GOL.21: 8 residues within 4Å:- Chain A: L.424, L.425
- Chain B: K.118, R.141, G.142, N.153, L.154
- Ligands: ACY.12
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain B- Water bridges: A:E.430, A:E.430, B:R.141, B:L.154
- Hydrogen bonds: B:K.118, B:N.153
GOL.40: 7 residues within 4Å:- Chain C: R.607, D.618, Y.619, R.623, Q.796, P.797
- Ligands: ACY.39
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:R.607, C:R.607, C:R.623, C:R.623, C:Q.796
- Water bridges: C:D.618
GOL.41: 10 residues within 4Å:- Chain C: M.259, L.283, Y.286, K.287, E.288, R.292, P.293, P.294, Y.295, A.296
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:K.287, C:E.288, C:P.293, C:Y.295, C:A.296, C:A.296
GOL.43: 8 residues within 4Å:- Chain C: L.424, L.425
- Chain D: K.118, R.141, G.142, N.153, L.154
- Ligands: ACY.34
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:K.118, D:N.153
- Water bridges: D:R.141, D:L.154, C:E.430, C:E.430
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.22: 7 residues within 4Å:- Chain B: L.125, K.129, L.134, T.136, N.146, A.147, T.148
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.136
PEG.44: 7 residues within 4Å:- Chain D: L.125, K.129, L.134, T.136, N.146, A.147, T.148
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:T.136
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gong, W. et al., Structure of the alpha2 epsilon2 Ni-dependent CO dehydrogenase component of the Methanosarcina barkeri acetyl-CoA decarboxylase/synthase complex. Proc.Natl.Acad.Sci.USA (2008)
- Release Date
- 2008-07-22
- Peptides
- Acetyl-CoA decarboxylase/synthase alpha subunit: AC
Acetyl-CoA decarboxylase/synthase epsilon subunit: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
GD
G
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 8 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x FE: FE (III) ION(Non-covalent)
- 2 x WCC: FE(3)-NI(1)-S(4) CLUSTER(Non-covalent)
- 2 x CMO: CARBON MONOXIDE(Non-functional Binders)
- 22 x ACY: ACETIC ACID(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gong, W. et al., Structure of the alpha2 epsilon2 Ni-dependent CO dehydrogenase component of the Methanosarcina barkeri acetyl-CoA decarboxylase/synthase complex. Proc.Natl.Acad.Sci.USA (2008)
- Release Date
- 2008-07-22
- Peptides
- Acetyl-CoA decarboxylase/synthase alpha subunit: AC
Acetyl-CoA decarboxylase/synthase epsilon subunit: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
GD
G