SMTL ID : 3cfo.1

Triple Mutant APO structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.772, R.836, M.866, D.867, Y.868, T.869 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.868, A:T.869, A:T.869 Salt bridges: A:R.772, A:R.836 SO4.2: 3 residues within 4Å: Chain A: K.48, Y.49, R.59 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.49 Salt bridges: A:K.48, A:R.59 SO4.3: 6 residues within 4Å: Chain A: G.729, L.730, E.731, T.732, Q.733, K.734 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.729, A:L.730, A:E.731, A:Q.733, A:K.734 Water bridges: A:T.732, A:T.732 SO4.4: 3 residues within 4Å: Chain A: Y.604, R.658, R.665 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.604, A:Y.604 Salt bridges: A:R.658, A:R.665

1 x GMP: GUANOSINE(Non-covalent)

GMP.5: 13 residues within 4Å: Chain A: Y.33, S.36, F.38, Y.49, G.84, M.85, A.91, D.95, F.370, K.374, K.378, V.379, I.380 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Y.33, A:S.36, A:Y.49, A:Y.49, A:M.85, A:D.95, A:K.378, A:K.378, A:I.380 pi-Stacking: A:F.38, A:F.38, A:F.370

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klimenko, D. et al., Insights into base selectivity from the structures of an RB69 DNA Polymerase triple mutant. To be Published

Release Date

2009-03-10

Peptides

DNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase

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