SMTL ID : 3cfw.1

L-selectin lectin and EGF domains

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN- MAN- BMA: alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-BMA.1: 1 residues within 4Å: Chain A: N.66 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: F.18, D.21, N.22 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.18 Hydrogen bonds: A:D.21, A:D.21 Water bridges: A:F.18

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: E.80, N.82, E.88, N.105, D.106 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.80, A:E.88, A:D.106, A:D.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mehta-D'souza, P. et al., Glycan Bound to the Selectin Low Affinity State Engages Glu-88 to Stabilize the High Affinity State under Force. J.Biol.Chem. (2017)

Release Date

2008-03-18

Peptides

L-selectin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L-selectin