SMTL ID : 3cgg.1 (1 other biounit)

Crystal structure of TehB-like SAM-dependent methyltransferase (NP_600671.1) from Corynebacterium glutamicum ATCC 13032 Kitasato at 2.00 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.1: 13 residues within 4Å: Chain A: A.53, G.54, T.74, D.75, L.76, G.96, D.97, L.98, S.113, M.118, L.121, I.133 Ligands: EDO.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.53, A:L.98, A:L.121, A:I.133 Hydrogen bonds: A:G.54, A:L.76, A:D.97, A:D.97, A:L.98 Water bridges: A:S.99 NHE.2: 4 residues within 4Å: Chain A: V.154, F.155, G.156, F.181 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.155, A:F.181 Hydrogen bonds: A:G.156 Water bridges: A:F.155

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: L.76, V.117, F.120, L.121 Ligands: NHE.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.117 Water bridges: A:D.97, A:V.117 EDO.4: 8 residues within 4Å: Chain A: T.74, V.94, G.96, L.98, D.101, Q.102, I.103 Ligands: EDO.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.74, A:T.74, A:D.101 Water bridges: A:L.98 EDO.5: 2 residues within 4Å: Chain A: Y.63, Q.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.67 EDO.6: 6 residues within 4Å: Chain A: L.72, Q.102, I.103, S.104, E.105 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.104, A:E.105 Water bridges: A:Q.102 EDO.7: 4 residues within 4Å: Chain A: Y.34, Y.63, K.66, F.88 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of TehB-like SAM-dependent methyltransferase (NP_600671.1) from Corynebacterium glutamicum ATCC 13032 Kitasato at 2.00 A resolution. To be published

Release Date

2008-03-18

Peptides

SAM-dependent methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SAM-dependent methyltransferase

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